View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1394_low_11 (Length: 427)

Name: NF1394_low_11
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1394_low_11
NF1394_low_11
[»] chr4 (2 HSPs)
chr4 (3-420)||(2512911-2513328)
chr4 (1-420)||(2496743-2497161)
[»] chr5 (1 HSPs)
chr5 (1-420)||(4259359-4259781)


Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 3 - 420
Target Start/End: Complemental strand, 2513328 - 2512911
Alignment:
Q  3 aagattgcaacattcaggatatatcatctcggttacgtatttaaatgtagggggtttctcgttatctatggtgttcacagcacatattggaattttctct 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2513328 aagattgcaacattcaggatatatcatctcggttacgtatttaaatgtagggggtttctcgttatctatggtgttcacagcacatattggaattttctct 2513229  T
Q  103 ttcccgtaggaaatatcttcgacacatagaccttctcttgttttgagttttttagatttcttcacttccttgaagacaagctctggttgtcccgggattc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  2513228 ttcccgtaggaaatatcttcgacacatagaccttctcttgttttgaattttttagatttcttcacttccttgaaggaaagctctggttgtcccgggattc 2513129  T
Q  203 ttcgcaagcgaaacttataaatcagcttcccatgtggtcctatatcctgccaacatgactcaactacataaagtccatcataaacatatatcttgctttt 302  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2513128 ttcgcaagcaaaacttataaatcagcttcccatgtggtcctatatcctgccaacatgactcaactacataaagtccatcataaacatatttcttgctttt 2513029  T
Q  303 tccatccatcgattcagagcctcgtatcaccctaacagaattctttaccacgctactgttcttcagagcaagattgccccgttcaagcttctgatcttct 402  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2513028 tccatccatcgattcagagccccgtatcaccctaacagaattctttaccacactactgttcttcagagcaagattgccccgttcaagcttctgatcttct 2512929  T
Q  403 ggctctttatctctgctc 420  Q
    ||||||||||| ||||||    
T  2512928 ggctctttatcactgctc 2512911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 2497161 - 2496743
Alignment:
Q  1 acaagattgcaacattcaggatatatcatctcggttacgtatttaaatgtagggggtttctcgttatctatggtgttcacagcacatattggaattttct 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  2497161 acaagattgcaacattcaggatatatcatctcggttatgtatttaaatgtagggggtttctcgttatctatggtgttcacagcacatataggaattt-ct 2497063  T
Q  101 ctttcccgtaggaaatatcttcgacacatagaccttctcttgttttgagttttttagatttcttcacttccttgaagacaagctctggttgtcccgggat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||| ||| ||||||||||||| ||||||||    
T  2497062 ctttcccgtaggaaatatcttcgacacatagaccttctcttgttttggactttttagatttcttcacttccttcaaggcaagctctggttgacccgggat 2496963  T
Q  201 tcttcgcaagcgaaacttataaatcagcttcccatgtggtcctatatcctgccaacatgactcaactacataaagtccatcataaacatatatcttgctt 300  Q
    ||||||||||| ||||||||||| || ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  2496962 tcttcgcaagctaaacttataaaccatcttcccacgtggccctatatcctgccaacatgactcaactacataaagtccatcgtaaacatatatctttctt 2496863  T
Q  301 tttccatccatcgattcagagcctcgtatcaccctaacagaattctttaccacgctactgttcttcagagcaagattgccccgttcaagcttctgatctt 400  Q
    || || ||||| |||||| |||| |||||||| ||||||||||||||| || |  |||||||||||| ||||||||| ||||||||||||||||||||||    
T  2496862 ttaccgtccattgattcatagccccgtatcactctaacagaattcttttcctcattactgttcttcaaagcaagatttccccgttcaagcttctgatctt 2496763  T
Q  401 ctggctctttatctctgctc 420  Q
    ||||||||||||| ||||||    
T  2496762 ctggctctttatcactgctc 2496743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 4259781 - 4259359
Alignment:
Q  1 acaagattgcaacattcaggatatatcatctcggttacgtatttaaatgtagggggtttctcgttatctatggtgttcacagcacatattggaattttct 100  Q
    |||| ||||||||| |||||||| |||||||  |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4259781 acaatattgcaacaatcaggatacatcatcttagttatgtatttaaatggagggggtttctcgttatctatggtgttcacagcacatatgggaattttct 4259682  T
Q  101 ctttcccgtaggaaatatcttcgacacatagaccttctcttgttttg---agttttttagatttcttcacttccttgaagacaagctctggttgtcccgg 197  Q
    |||||||||||||||||||  | ||  ||||||||||||||||||||   |  |||||||||||||||| ||||||  |  ||||||||||||| |||||    
T  4259681 ctttcccgtaggaaatatcaacaacggatagaccttctcttgttttggacaactttttagatttcttcagttccttccaagcaagctctggttgacccgg 4259582  T
Q  198 gattcttcgcaagcgaaacttataaatcagcttcccatgtggtcctatatcctgccaacatgactcaactacataaagtccatcataaacatatatcttg 297  Q
      |||||||||||||||||||||||| ||||||||||||||| || |||||||||||| ||||||||||| |||| |||||||| |||||||||||| ||    
T  4259581 ctttcttcgcaagcgaaacttataaaccagcttcccatgtggccccatatcctgccaatatgactcaacttcatagagtccatcgtaaacatatatcctg 4259482  T
Q  298 ctttttccatccatcgattcagagcctcgtatcaccctaacagaattctttaccacgctactgttcttcagagcaagattgccccgttcaagcttctgat 397  Q
    ||||||||||||   ||||||||||| ||||||||||||||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||    
T  4259481 ctttttccatccgctgattcagagccccgtatcaccctaacagaattcttgacctcactactgttcttcaaagcaagattgccccgttcaagcttctgat 4259382  T
Q  398 cttctggctctttatctctgctc 420  Q
    |||||||||||||||| ||||||    
T  4259381 cttctggctctttatcactgctc 4259359  T

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