View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1394_low_12 (Length: 422)

Name: NF1394_low_12
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1394_low_12
NF1394_low_12
[»] chr1 (5 HSPs)
chr1 (233-411)||(6154786-6154964)
chr1 (1-148)||(6155049-6155196)
chr1 (37-109)||(6153594-6153665)
chr1 (39-117)||(1356271-1356348)
chr1 (37-117)||(35202351-35202430)
[»] chr5 (4 HSPs)
chr5 (233-408)||(34044207-34044382)
chr5 (37-148)||(34044010-34044121)
chr5 (37-109)||(34044924-34044996)
chr5 (175-208)||(34044148-34044181)
[»] chr2 (1 HSPs)
chr2 (36-148)||(38934602-38934715)
[»] chr4 (1 HSPs)
chr4 (37-116)||(20284068-20284146)
[»] chr8 (1 HSPs)
chr8 (37-138)||(33520848-33520948)
[»] chr3 (1 HSPs)
chr3 (37-109)||(4523176-4523247)
[»] chr6 (1 HSPs)
chr6 (42-109)||(4275075-4275141)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 233 - 411
Target Start/End: Complemental strand, 6154964 - 6154786
Alignment:
Q  233 cttccttctctctcgtttggatttcagcagacccaggaaaaattaagaacccatttcactgtaattaagaaaaccacgatcgttgccgaccaaacccagt 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  6154964 cttccttctctctcgtttggatttcagcagacccaggaaaaattaagaacccatttcactgtaattaagaaaaccatgatcgttgccgacaaaacccagt 6154865  T
Q  333 cacttcgtcgaccgccgccgttgtcgtattgtcaaacatgaggttgccatcactgttccttgtgttactgttgtttcat 411  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6154864 cactccgtcgaccgccgccgttgtcgtattgtcaaacatgaggttgccatcactgttccttgtgttactgttgtttcat 6154786  T

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Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 6155196 - 6155049
Alignment:
Q  1 ttgaacgagtattcaggaatatgagatgtacaaatagggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatg 100  Q
    ||||| ||||||| ||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6155196 ttgaaggagtattgaggaatatgagatgtacaaacggggtgcagatcctctccatttgtagagaaaatggccaatctcaatttccactcataaaaacatg 6155097  T
Q  101 acatgtggataagtaaaaatggacggttctgattcattcaatgaatta 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6155096 acatgtggataagtaaaaatggacggttctgattcattcaatgaatta 6155049  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 6153594 - 6153665
Alignment:
Q  37 gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtgga 109  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  6153594 gggtgcagatcctctccatttgtagagaaaatggccaat-tcaatttccactcataaaaacatgacacgtgga 6153665  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 1356271 - 1356348
Alignment:
Q  39 gtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaa 117  Q
    ||||||||||||||||||||| |   |||| | ||||||||||||||  ||||||||||| |||| |||||||||||||    
T  1356271 gtgcagatcctctccatttgtggtagaaattg-caatctcaatttcctttcataaaaacaagacacgtggataagtaaa 1356348  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 35202430 - 35202351
Alignment:
Q  37 gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaa 117  Q
    ||||||||||||||||||||||  | | |||||||| ||||||||||||  ||||||||||| ||||  | ||||||||||    
T  35202430 gggtgcagatcctctccatttggtgaggaaatggcc-atctcaatttcctttcataaaaacaagacacatcgataagtaaa 35202351  T

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Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 233 - 408
Target Start/End: Original strand, 34044207 - 34044382
Alignment:
Q  233 cttccttctctctcgtttggatttcagcagacccaggaaaaattaagaacccatttcactgtaattaagaaaaccacgatcgttgccgaccaaacccagt 332  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34044207 cttccttctctctcgtttggatttcagcagacccgggaaaaattaagaacctatttcactgtaattaagaaaaccacgatcgttgccgaccaaacccagt 34044306  T
Q  333 cacttcgtcgaccgccgccgttgtcgtattgtcaaacatgaggttgccatcactgttccttgtgttactgttgttt 408  Q
    |||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||    
T  34044307 cactccgtcgaccgccgccgttgtcgtatggtcaaacatgaggttgtcatcactgttccttgtgttattgttgttt 34044382  T

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Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 34044010 - 34044121
Alignment:
Q  37 gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaaaatggacggttctgattca 136  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34044010 gggtgcagatcctctccatttgtagagaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaaaatggacggttcttattca 34044109  T
Q  137 ttcaatgaatta 148  Q
    ||||||||||||    
T  34044110 ttcaatgaatta 34044121  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 34044996 - 34044924
Alignment:
Q  37 gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtgga 109  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  34044996 gggtgcaaatcctctccatttgtagagaaaatggccaatctcaatttccactcataaaaacatgacacgtgga 34044924  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 34044148 - 34044181
Alignment:
Q  175 gataaacaaaacattgaaaaccacaccacttctg 208  Q
    ||||||||||||||||||||||||||| ||||||    
T  34044148 gataaacaaaacattgaaaaccacaccgcttctg 34044181  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 38934715 - 38934602
Alignment:
Q  36 agggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaa-aatggacggttctgatt 134  Q
    |||||||| |||||||||||||   | ||||||||| ||||||||||||||||| |||||| | |||||||| | ||  ||| |||  |||||||||||     
T  38934715 agggtgcaaatcctctccattttgtgagaaaatggcaaatctcaatttccactcctaaaaataagacatgtgtaaaataaaacaatcaacggttctgata 38934616  T
Q  135 cattcaatgaatta 148  Q
    ||||||| ||||||    
T  38934615 cattcaaagaatta 38934602  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 20284146 - 20284068
Alignment:
Q  37 gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaa 116  Q
    ||||||||||||||| ||||||| |  |||||||| |||||||||||||| || ||| |||| |||| ||||||||||||    
T  20284146 gggtgcagatcctctacatttgtggaaaaaatggc-aatctcaatttccattcttaagaacaagacacgtggataagtaa 20284068  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 33520948 - 33520848
Alignment:
Q  37 gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtggataagtaaaaatggacggttctgattca 136  Q
    ||||||||||||||||||||||  | | |||||||| ||| ||||||||  | ||||||||| |||| ||||||||||  ||||  | ||||||||||||    
T  33520948 gggtgcagatcctctccatttggtgaggaaatggcc-atcacaatttcctttaataaaaacaggacacgtggataagttgaaatcaatggttctgattca 33520850  T
Q  137 tt 138  Q
    ||    
T  33520849 tt 33520848  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 4523176 - 4523247
Alignment:
Q  37 gggtgcagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtgga 109  Q
    |||||||||||||||||||||   | | ||||| | |||||||||||||| ||||||||||| ||||||||||    
T  4523176 gggtgcagatcctctccattttatgaggaaatgac-aatctcaatttccaatcataaaaacaagacatgtgga 4523247  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 4275075 - 4275141
Alignment:
Q  42 cagatcctctccatttgtagcgaaaatggccaatctcaatttccactcataaaaacatgacatgtgga 109  Q
    ||||||||||||||||     ||||||||| |||||||||||||| |||||||||||||||| |||||    
T  4275075 cagatcctctccatttaggtagaaaatggc-aatctcaatttccattcataaaaacatgacacgtgga 4275141  T

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