View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1394_low_14 (Length: 411)

Name: NF1394_low_14
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1394_low_14
NF1394_low_14
[»] chr6 (3 HSPs)
chr6 (137-403)||(14821649-14821915)
chr6 (299-347)||(6417578-6417626)
chr6 (299-345)||(19633429-19633475)
[»] chr5 (3 HSPs)
chr5 (228-286)||(20477023-20477081)
chr5 (296-340)||(20477106-20477150)
chr5 (300-350)||(17206970-17207020)
[»] chr4 (2 HSPs)
chr4 (301-363)||(53759968-53760030)
chr4 (300-345)||(1547373-1547418)
[»] chr3 (1 HSPs)
chr3 (315-349)||(51763081-51763115)
[»] chr7 (1 HSPs)
chr7 (299-352)||(10616194-10616247)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 137 - 403
Target Start/End: Complemental strand, 14821915 - 14821649
Alignment:
Q  137 ggaacgaacagtattactgtaccctttgttcttctttctaatctgaaaccctataaacataaagcgctcaagccatcaccgaacccgcagccctagttca 236  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  14821915 ggaaagaacagtattactgtaccctttgttcttctttctaatctgaaaccctagaaacataaagcgctcaagccatcaccgaaaccgcagccctagttca 14821816  T
Q  237 ctgccaatgaaaaggaagaggataacttcttctctccaatcttcttcacagcaaattattttatatttacccgatgattgttgggaatctatcttcaaat 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14821815 ctgccaatgaaaaggaagaggataacttcttctctccaatcttcttcacagcaaattattttatatttacccgatgattgttgggaatctatcttcaaat 14821716  T
Q  337 tcattatcaacaacaatgacgaaaacagcttgaaatgtctctccctcgtctccaagcagttcatctc 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14821715 tcattatcaacaacaatgacgaaaacagcttgaaatgtctctccctcgtctccaagcagttcctctc 14821649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 6417626 - 6417578
Alignment:
Q  299 atatttacccgatgattgttgggaatctatcttcaaattcattatcaac 347  Q
    ||||||||||||||| |||||||||  ||||||||||||||| ||||||    
T  6417626 atatttacccgatgagtgttgggaacttatcttcaaattcatcatcaac 6417578  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 345
Target Start/End: Complemental strand, 19633475 - 19633429
Alignment:
Q  299 atatttacccgatgattgttgggaatctatcttcaaattcattatca 345  Q
    ||||||||| ||||| |||||||||||||||||| ||||| ||||||    
T  19633475 atatttacctgatgagtgttgggaatctatcttcgaattccttatca 19633429  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 20477023 - 20477081
Alignment:
Q  228 cctagttcactgccaatgaaaaggaagaggataacttcttctctccaatcttcttcaca 286  Q
    ||||||||| |||||||||||||||||| || | ||||||||||| |||||||||||||    
T  20477023 cctagttcaatgccaatgaaaaggaagatgacagcttcttctctcaaatcttcttcaca 20477081  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 20477106 - 20477150
Alignment:
Q  296 tttatatttacccgatgattgttgggaatctatcttcaaattcat 340  Q
    ||||||||||||||| || |||||||||||||| |||||||||||    
T  20477106 tttatatttacccgacgactgttgggaatctattttcaaattcat 20477150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 17206970 - 17207020
Alignment:
Q  300 tatttacccgatgattgttgggaatctatcttcaaattcattatcaacaac 350  Q
    |||||||  ||||| |||||| ||||||||||||||||||| |||||||||    
T  17206970 tatttactagatgaatgttggaaatctatcttcaaattcatcatcaacaac 17207020  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 363
Target Start/End: Original strand, 53759968 - 53760030
Alignment:
Q  301 atttacccgatgattgttgggaatctatcttcaaattcattatcaacaacaatgacgaaaaca 363  Q
    ||||||| ||||| || |||||||||||||||||| || | ||||||||||| ||| ||||||    
T  53759968 atttacctgatgagtgctgggaatctatcttcaaactcgtcatcaacaacaaggacaaaaaca 53760030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 1547373 - 1547418
Alignment:
Q  300 tatttacccgatgattgttgggaatctatcttcaaattcattatca 345  Q
    |||||||| || || |||||||||||||||||||||||||| ||||    
T  1547373 tatttacctgacgagtgttgggaatctatcttcaaattcatcatca 1547418  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 349
Target Start/End: Original strand, 51763081 - 51763115
Alignment:
Q  315 tgttgggaatctatcttcaaattcattatcaacaa 349  Q
    |||||||||||||||||||||||||| ||||||||    
T  51763081 tgttgggaatctatcttcaaattcatcatcaacaa 51763115  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 10616247 - 10616194
Alignment:
Q  299 atatttacccgatgattgttgggaatctatcttcaaattcattatcaacaacaa 352  Q
    ||||||||| ||||| |||||||||| |||||||||||| ||  ||||||||||    
T  10616247 atatttacctgatgagtgttgggaatgtatcttcaaatttatattcaacaacaa 10616194  T

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