View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_19 (Length: 382)
Name: NF1394_low_19
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 32 - 373
Target Start/End: Complemental strand, 40805898 - 40805555
Alignment:
| Q |
32 |
tataataccaactttttacttaattattttaattgaaaaaatttaaacgttacttaatttatcgccaaagaaaggctatatatat--taattaattcctc |
129 |
Q |
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| T |
40805898 |
tataataccaactttttacttaattattttaattgaaaaaatttaaacgttacttaatttatcgccaaagaaaggctatatatatattaattaattcctc |
40805799 |
T |
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| Q |
130 |
acaaaacatttatctgtaattagcttcactgtcacagacattgaagaactcttaagcttttctggtacactatcctgaaggaatgaagggtagtaatgga |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40805798 |
acaaaacatttatctgtaattagcttcactgtcacagacattgaagaactcttaagcttttttggtacactatcctgaaggaatgaagggtagtaatgga |
40805699 |
T |
|
| Q |
230 |
ataaataaataaagtatgaagtggcagaaaggttctttagaggatgttgtggtccgcaactactactactgattgcaactattcagtagtcacaagcaag |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40805698 |
ataaataaataaagtatgaagtggcagaaaggttctttagaggatgttgtggtccgcaactactactactgattgcaactattcagtagtcacaagcaag |
40805599 |
T |
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| Q |
330 |
cactagcagcaagcatttcaactctttttctcttcccttcatct |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40805598 |
cactagcagcaagcatttcaactctttttctcttcccttcatct |
40805555 |
T |
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