View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_2 (Length: 553)
Name: NF1394_low_2
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 29 - 520
Target Start/End: Complemental strand, 6171437 - 6170945
Alignment:
| Q |
29 |
attattgtgagatttaaggaatatggaaaactaattaaaattcattatttcgtcatatcatctcacttttataagtcacatatttgatcaaatatttgta |
128 |
Q |
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| T |
6171437 |
attattgtgagatttaaggaatatggaaaactaattaaaattcattatttcgtcatatcatctcacttttataagtcacatatttgatcaaatatttgta |
6171338 |
T |
|
| Q |
129 |
attgttcatttgcctttatccnnnnnnnnn-tactgtaaaattgatttacatgaacattatatggctattaaactgtattttaattaacatgtcatggat |
227 |
Q |
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| T |
6171337 |
attgttcatttgcctttatccaaaaaaaaaatactgtaaaattgatttacatgaacattatatggctattaaactgtattttaattaacatgtcatagat |
6171238 |
T |
|
| Q |
228 |
tcaatcatgcaaataatatatcaacttatttggtcgtgtagtccatttaaatgtccctgaatgaattgatcttttttgcgaaattggtgacggttgagct |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6171237 |
tcaatcatgcaaataatatatcaacttatttggtcgtgtagtccatttaaatgtccctgaatgaattgatcttttttgcgaaattggtgacggttgagct |
6171138 |
T |
|
| Q |
328 |
tgagcaacggccgatttaggttgtgtttgtttgtcgggtgtttggttttcgttgccctactggttatgtcttgctctggtactcacgagtttttgctatt |
427 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6171137 |
tgagcaacgaccgatttaggttgtgtttgtttgtcgggtgtttggttttcgttgccctactggttatgtcttgctctggtactcacgagtttttgctatt |
6171038 |
T |
|
| Q |
428 |
ggtgtttttaagttgcggtctccctctttaacctttgcacgttggagtttatatctcttcgtttttctattttccattttgttgtatattgtt |
520 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6171037 |
ggtgtttttaagttgcggtctccctctttaacctttgcacgttggagtttatatctcttcgtttttctattttccattttgttgtatattgtt |
6170945 |
T |
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