View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_20 (Length: 378)
Name: NF1394_low_20
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 30 - 366
Target Start/End: Complemental strand, 23225508 - 23225172
Alignment:
| Q |
30 |
cctttcttttatttgttttccttaaattgttatgtgaagtacgactcaattgttctgtattttaattagcagaatcattgtcctggtgttaaatttagat |
129 |
Q |
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| T |
23225508 |
cctttcttttatttgttttccttgaattgttatgtgaagtacgactcaattgttctgtattttaattagcagaatcattgtcctggtgttaattttagat |
23225409 |
T |
|
| Q |
130 |
agcgaactttgtctttaattatctctcaattgtatctgctttgctgaattaattcatttgcttaatttaatttgtcgattttatttgcttgtgttttact |
229 |
Q |
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| T |
23225408 |
agcgaactttgtctttaattatctctcaattgtatctgctttgctgaattaattcatttgcttaatttaatttgtcgattttatttgcttgtgttttact |
23225309 |
T |
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| Q |
230 |
tctaagaatatgatgtactgctgtttgaattgtttaatttgcttcttactaagcaaggaacggggaattgacttgacttgcataaaaaatcaatcctata |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23225308 |
tctaagaatatgatgtactgctgtttgaattgtttaatttgcttcttactaagcaaggaacggggaattgacttgacttgcataaaaattcaatcctata |
23225209 |
T |
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| Q |
330 |
aagtattgatagaagcttgagtataatggggtgccta |
366 |
Q |
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| T |
23225208 |
aagtattgataggagcttgagtataatggggtgccta |
23225172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 49855269 - 49855172
Alignment:
| Q |
36 |
ttttatttgttttccttaaattgttatgtgaagtacgactcaattgttctgtattttaattagcagaatcattgtcctggtgttaaatttagatagcgaa |
135 |
Q |
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| T |
49855269 |
ttttatttgttttccttgaattgttatgtgaggcacgactcaattttgctgtttgtta----gcagaatcattgtactggtgttaattttagatagcgaa |
49855174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 49855121 - 49855064
Alignment:
| Q |
164 |
tctgctttgctgaattaattcatttgcttaatttaatttgtcgattttatttgcttgtgtttt |
226 |
Q |
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|||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
49855121 |
tctgctttactgaattaattcatttgcttacttt-----gtcgattttatttgcttgtgtttt |
49855064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 154
Target Start/End: Complemental strand, 23217706 - 23217675
Alignment:
| Q |
123 |
tttagatagcgaactttgtctttaattatctc |
154 |
Q |
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| T |
23217706 |
tttagatagcgaactttgtctttaattatctc |
23217675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 19369358 - 19369301
Alignment:
| Q |
173 |
ctgaattaattcatttgcttaatttaatttgtcgattttatttgcttgtgttttactt |
230 |
Q |
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||||||||||||||| |||||||||||| || | ||||||| || ||||||||||||| |
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| T |
19369358 |
ctgaattaattcattcgcttaatttaatatggcaattttatatgtttgtgttttactt |
19369301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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