View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_22 (Length: 371)
Name: NF1394_low_22
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 5 - 362
Target Start/End: Original strand, 29683652 - 29684001
Alignment:
| Q |
5 |
attgctcttgatattgtgtagataatccataatagcaacttgctggttctaaacattgtgaataaaaaataagactataagtcatgtgtatatgtatgat |
104 |
Q |
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| T |
29683652 |
attgctcttgatattgtgcagataatccataatagcaacttgctggttctaaacattgtgaataaaaaataagactgtaagtcatgtgtatatgtatgat |
29683751 |
T |
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| Q |
105 |
gaattaatatactaactttcttaaaattctatttctcatatgatcatattcatacctgattgtgcagagaaggaggaagacatgatcgtttctttttctt |
204 |
Q |
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| T |
29683752 |
gaattaatatactaactttcttaaaattctatttc--------ttatattcatacctgattgtgtagagaaggaggaagacatgatcgtttctttttctt |
29683843 |
T |
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| Q |
205 |
ctgaacgctgaaacttctttatctcgttgaa-nnnnnnnngtgtgcactttttcttatggtttgcaagccaatttatagataatgaggttagggtttctt |
303 |
Q |
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| T |
29683844 |
ctgaacgctgaaacttctttatctcgttgaatttttttttgtgtgcactttttcttatgg-ttgcaagccaatttatagataatgaggttagggtttctt |
29683942 |
T |
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| Q |
304 |
tttgaggttgctttatggacaagaaagtaatttgttgagattttttcggctagaataat |
362 |
Q |
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| T |
29683943 |
tttaaggttgctttatggacaagaaagtaatttgttgagattttttcggctacaataat |
29684001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 35526163 - 35526236
Alignment:
| Q |
5 |
attgctcttgatattgtgtagataatccataatagcaacttgctggttctaaacattgtgaataaaaaataaga |
78 |
Q |
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||||||||| ||||||| ||| |||||||||||| | ||||||||||||||| ||||||||||| |||||| |
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| T |
35526163 |
attgctctttgtattgtgcagacaatccataatagtattgtgctggttctaaacaatgtgaataaaacataaga |
35526236 |
T |
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