View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_23 (Length: 371)
Name: NF1394_low_23
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_23 |
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| [»] scaffold0361 (1 HSPs) |
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| [»] scaffold0069 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 33 - 273
Target Start/End: Complemental strand, 10648106 - 10647866
Alignment:
| Q |
33 |
tgttgtggaactcctgagtgacttgtgttgatccctcgatgtcaatttcaaaagttgagcaaccttgactagtcacccaacaatattttactagtgaaag |
132 |
Q |
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| T |
10648106 |
tgttgtggaactcctgagtgacttgtgttgatccctcgatgtcaattttgaaagttgagcaaccttgactagtcacccaacaatattttactagtgaatg |
10648007 |
T |
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| Q |
133 |
tgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcacatgtactcctggtttactatataaagttagtaatatagtatgacatt |
232 |
Q |
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| T |
10648006 |
tgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcacatgtactcctagtttactatataaagttagtaatatggtatgacatt |
10647907 |
T |
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| Q |
233 |
cagcctttgattgttagttcatcctttattttgggagtatt |
273 |
Q |
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| T |
10647906 |
cagcctttgattgttagttcatcctttattttgggagtatt |
10647866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 281 - 353
Target Start/End: Original strand, 4947127 - 4947198
Alignment:
| Q |
281 |
caccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttctttttaagtcaattgtctccttagc |
353 |
Q |
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| T |
4947127 |
caccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttc-ttttaagtcaattgtctccttagc |
4947198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 281 - 361
Target Start/End: Original strand, 11799 - 11879
Alignment:
| Q |
281 |
caccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttctttttaagtcaattgtctccttagctgcctttg |
361 |
Q |
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| T |
11799 |
caccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttctttttaagtcaattgtctccttagctgcctttg |
11879 |
T |
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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 98 - 204
Target Start/End: Original strand, 12178890 - 12178996
Alignment:
| Q |
98 |
tgactagtcacccaacaatattttactagtgaaagtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcacatgtactcctgg |
197 |
Q |
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| T |
12178890 |
tgactagtcacctgacaatattttactagtgagagtgtaaagcatcgaagttaaccagtgaggtgttgcttcaatagagacgctgaacatgtactcctag |
12178989 |
T |
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| Q |
198 |
tttacta |
204 |
Q |
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| T |
12178990 |
tctacta |
12178996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 8680692 - 8680785
Alignment:
| Q |
112 |
acaatattttactagtgaaagtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcacatgtactcctggtttactat |
205 |
Q |
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| T |
8680692 |
acaatattttactagtgagagtgtcaagcaccgaagtaaactagtatggtgttccttcaacaaagacgttggacatgtactcctggtatactat |
8680785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 8471 - 8588
Alignment:
| Q |
98 |
tgactagtcacccaacaatattttactagtgaaagtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcacatgtactcctgg |
197 |
Q |
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| T |
8471 |
tgactaatcacctgacaatattttactagtgagaatgtaaagcatcgaagtcaactagtgaggtgttgcttcaatagagacgctgaacatgtactcctag |
8570 |
T |
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| Q |
198 |
tttactatataaagttag |
215 |
Q |
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| T |
8571 |
tctactatctagagttag |
8588 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 10301226 - 10301128
Alignment:
| Q |
117 |
attttactagtgaaagtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcacatgtactcctggtttactatataaagttag |
215 |
Q |
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||||||||| |||||||||||| ||||||||| ||| ||||| |||| |||||| ||||| | | ||||||| |||| || |||||| || |||||| |
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| T |
10301226 |
attttactaatgaaagtgtgaagcaccgaagtcaacccgtgagatgttgcttcaaaagagatgctaaacatgtattcctagtctactatctagagttag |
10301128 |
T |
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