View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1394_low_24 (Length: 370)
Name: NF1394_low_24
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_24 |
 | |
|
| [»] scaffold0012 (2 HSPs) |
| | |
|
| [»] scaffold0006 (6 HSPs) |
| | |
|
| [»] scaffold0069 (2 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
| [»] scaffold0783 (1 HSPs) |
| | |
|
| [»] scaffold0406 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0012 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 3 - 303
Target Start/End: Original strand, 116060 - 116360
Alignment:
| Q |
3 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattgtgtccaaacttggagtatctattaccactctctgtagccactca |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || | || ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
116060 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtcgaagtacgatattgtccaatcttggagtatctattaccactctctgtagccactcg |
116159 |
T |
|
| Q |
103 |
ttgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatattt |
202 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
116160 |
ttgctctcatctcaaggaacttagtataaaatcttgtgggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatattt |
116259 |
T |
|
| Q |
203 |
gagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaaag |
302 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
116260 |
gagtttaatcaactaactactttaatgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaaag |
116359 |
T |
|
| Q |
303 |
t |
303 |
Q |
| |
|
| |
|
|
| T |
116360 |
t |
116360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 4 - 297
Target Start/End: Original strand, 108244 - 108537
Alignment:
| Q |
4 |
agatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattgtgtccaaacttggagtatctattaccactctctgtagccactcat |
103 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
108244 |
agatcctcaaggaattcttagttttcaaaatctaataaatgtacaattggaatattgtgcaaacttggagtatctattaccactctctctagccactcgt |
108343 |
T |
|
| Q |
104 |
tgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatatttg |
203 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||| ||||||||| ||||||||| |||||| || ||||||||||| |
|
|
| T |
108344 |
tgctcacatctcaaggaagttagtataaaatattgttcgaacatgaaggtaattgttggagaggagaaagaatctagcatgaatgaagatcccatatttg |
108443 |
T |
|
| Q |
204 |
agtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgag |
297 |
Q |
| |
|
||||||||||| ||| ||||||| | |||||| |||| || || ||||||||||||||||||||||||| | ||| ||||||||||||||| |
|
|
| T |
108444 |
agtttaatcaattaagtactttattactttggaacttatatgaactcaatggtttctatgctggaaatcatattctagaatgtccatctttgag |
108537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 4 - 297
Target Start/End: Original strand, 219052 - 219345
Alignment:
| Q |
4 |
agatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattgtgtccaaacttggagtatctattaccactctctgtagccactcat |
103 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
219052 |
agatcctcaaggaattcttagttttcaaaatctaataaatgtacaattgaaattgtgtctaaacttggagtatctattaccactctctgtagccactcat |
219151 |
T |
|
| Q |
104 |
tgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatatttg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
219152 |
tgctcacatctcaaggaacttagtataaaatcttgttggaaaatgaaggaaattgttgcagaggagaaagaatctagcatgaatgcagctcccatatttg |
219251 |
T |
|
| Q |
204 |
agtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgag |
297 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||| || || | || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
219252 |
agtttaatcaactaagtactttattgctttgggactcacctgaactcaatggtttctatgctggaaatcacactctgctatgtccatctttgag |
219345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 4 - 303
Target Start/End: Original strand, 168461 - 168760
Alignment:
| Q |
4 |
agatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattg--tgtccaaacttggagtatctattaccactctctgtagccactc |
101 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| | | ||| ||| ||| |||||||||| ||||||| |||| ||||||||| |
|
|
| T |
168461 |
agatcctcaaggaattcttagttttcaaaatctaataaatgtacaagt--agttggttgttcaagcttggagtattcattaccattctccatagccactc |
168558 |
T |
|
| Q |
102 |
attgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatatt |
201 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
168559 |
gttgctcacatctcaaggaactttgtataaaatcttgttggaaaatgaaggaaattgttgcagaggagaaagaatctagtgtgaatgcagctccggtatt |
168658 |
T |
|
| Q |
202 |
tgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaaa |
301 |
Q |
| |
|
||| ||||||||||||| ||||||| |||||||| || || |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
168659 |
tgaatttaatcaactaagtactttattgctttggcactcacctaaactcaatggtttctatgctggaaatcatactctgctatgtccatctttgaggaaa |
168758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 57274 - 57574
Alignment:
| Q |
1 |
tagagatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattgtgtccaaacttggagtatctattaccactctctgtagccact |
100 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |||| ||||||||| |
|
|
| T |
57274 |
tagaaatcctgatggaattcttagttttcaaaatctaataaatgtacaattgaaacattgttcaaacttggagtatttattaccattctccgtagccact |
57373 |
T |
|
| Q |
101 |
cattgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatat |
200 |
Q |
| |
|
| ||||||||| || ||||||||| |||| || |||| ||||||||||| ||||||||||||||||||| ||||||||| |||||| ||||||||||| |
|
|
| T |
57374 |
cgttgctcacagcttaaggaacttgatataggatgttgtgggaacatgaagcaaattgttgcagaggagaaagaatctagcatgaatgaagctcccatat |
57473 |
T |
|
| Q |
201 |
ttgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || | ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
57474 |
ttgagtttaatcaactaactactttacggctttacaactcaaataaactcaatggtttctatgctggaaatcatactctgctatgtccatctttgaagaa |
57573 |
T |
|
| Q |
301 |
a |
301 |
Q |
| |
|
| |
|
|
| T |
57574 |
a |
57574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 3 - 300
Target Start/End: Original strand, 145203 - 145500
Alignment:
| Q |
3 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattgt-gtccaaacttggagtatctattaccactctctgtagccactc |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||| | | | || || || ||| |||||| ||||||||||||||||| |||||||||| |
|
|
| T |
145203 |
gagatcctcaaggaattcttagttttcaaaatctaatatatgtactact-agatggttgtacaagcttggaatatctattaccactctccgtagccactc |
145301 |
T |
|
| Q |
102 |
attgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatatt |
201 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |
|
|
| T |
145302 |
gttgctcacatctcaaggaacttggtataaaatggtgtgaaaacatgaaggaaattgttgcagaggagaaagaatctagcttgagtgcagctcccatatt |
145401 |
T |
|
| Q |
202 |
tgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaa |
300 |
Q |
| |
|
||||||||||||||||| ||||||| | |||||| || || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
145402 |
tgagtttaatcaactaagtactttattactttggcactcacctaaactcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaa |
145500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #5
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 3 - 300
Target Start/End: Original strand, 110211 - 110508
Alignment:
| Q |
3 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattgtgtccaaacttggagtatctattaccactctctgtagccactca |
102 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||| |||||||||||||||||||||| |
|
|
| T |
110211 |
gagatcctcaaggaattcttagttttcaaaatctaataaatgtacaattgaaggggtgtgcacgcttggagtatctgttaccactctctgtagccactcg |
110310 |
T |
|
| Q |
103 |
ttgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatattt |
202 |
Q |
| |
|
|||||||||||||||||||||| | |||| | ||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
110311 |
ttgctcacatctcaaggaactttggataagagattgttacaacatgaagcaaattgttgcagaggagaaagaatctagtgtgaatgcagctcccatattt |
110410 |
T |
|
| Q |
203 |
gagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaa |
300 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||||| ||||| | ||| ||||||||||||||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
110411 |
gagtttaaccaactaagtactttattgctttggagcttatacaaactcaatggtttctatgctggaaatcatactctagcgtgcccatctttgaggaa |
110508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #6
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 3 - 297
Target Start/End: Original strand, 140131 - 140425
Alignment:
| Q |
3 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattgt-gtccaaacttggagtatctattaccactctctgtagccactc |
101 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| | | | || || || |||||||||||||||||||||||| |||||||||| |
|
|
| T |
140131 |
gagatcctgaaggaattcttagttttcgaaatctaataaatgtacaact-agttagttgtagaagcttggagtatctattaccactctccgtagccactc |
140229 |
T |
|
| Q |
102 |
attgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatatt |
201 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |
|
|
| T |
140230 |
gttgctcacatctcaaggaacttggtataaaatggtgtgaaaacattaaggaaattgttgcagaggagaaagaatctagcttgagtgcagctcccatatt |
140329 |
T |
|
| Q |
202 |
tgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgag |
297 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| ||||| |||| ||||||||||||||||||||||||| ||||| ||| ||||||||||| |
|
|
| T |
140330 |
tgagtttaatcaactaagtactttattgctttggaacttacctaaactcaatggtttctatgctggaaatcatactctagcatgcccatctttgag |
140425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 15)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 3 - 303
Target Start/End: Original strand, 20368741 - 20369041
Alignment:
| Q |
3 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattgtgtccaaacttggagtatctattaccactctctgtagccactca |
102 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||| |||||||| ||||||||||||||| |
|
|
| T |
20368741 |
gagatcctcaaggaattcttagttttcaaaatctaataaatgtacaattgaaacattgtgcaagcttggagtatttattaccattctctgtagccactcg |
20368840 |
T |
|
| Q |
103 |
ttgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatattt |
202 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20368841 |
ttgctctcatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatattt |
20368940 |
T |
|
| Q |
203 |
gagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaaag |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20368941 |
gagtttaatcaactaactactttactgctttggtacttagaagaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaaag |
20369040 |
T |
|
| Q |
303 |
t |
303 |
Q |
| |
|
| |
|
|
| T |
20369041 |
t |
20369041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 3 - 303
Target Start/End: Original strand, 20477814 - 20478114
Alignment:
| Q |
3 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattgtgtccaaacttggagtatctattaccactctctgtagccactca |
102 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| || | || ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20477814 |
gagatcctcaaggaattcttagttttcaaaatctaataaatgtcgaagtactatattgtccaatcttggagtatctattaccactctctgtagccactcg |
20477913 |
T |
|
| Q |
103 |
ttgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatattt |
202 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
20477914 |
ttgctctcatctcaaggaacttagtataaaatcttgtgggaacatgaaggaaattgttgcagaggagaaagaatctagtgtgaatgcagctccggtattt |
20478013 |
T |
|
| Q |
203 |
gagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaaag |
302 |
Q |
| |
|
|| ||||||||||||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20478014 |
gaatttaatcaactaagtactttattgctttggaacttacataaactcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaaag |
20478113 |
T |
|
| Q |
303 |
t |
303 |
Q |
| |
|
| |
|
|
| T |
20478114 |
t |
20478114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 3 - 301
Target Start/End: Original strand, 13543686 - 13543984
Alignment:
| Q |
3 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaatt-gaaattgtgtccaaacttggagtatctattaccactctctgtagccactc |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||| |||| | ||| ||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13543686 |
gagatcctcaaggaattcttagttttcaaaatttaataaatgtacaattagaaagt-tgtacaagcttggagtatctattaccactctctgttgccactc |
13543784 |
T |
|
| Q |
102 |
attgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatatt |
201 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| |||| ||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
13543785 |
gttgctcacatctcaaggaactttatatagaattttgtgaaaacatgaaggaaattgttgcagaggagaaagaatctagcatgaatgaagctcccatatt |
13543884 |
T |
|
| Q |
202 |
tgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaaa |
301 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| | ||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
13543885 |
tgagtttaatcaactaactactttatggctttacggctcagataaactcaatggtttctatgctggaaatcatactctactatgtccatctttgaggaaa |
13543984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 4 - 303
Target Start/End: Original strand, 13670847 - 13671146
Alignment:
| Q |
4 |
agatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattg--tgtccaaacttggagtatctattaccactctctgtagccactc |
101 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| | | ||| ||| ||| |||||||||| ||||||| |||| ||||||||| |
|
|
| T |
13670847 |
agatcctcaaggaattcttagttttcaaaatctaataaatgtacaagt--agttggttgttcaagcttggagtattcattaccattctccatagccactc |
13670944 |
T |
|
| Q |
102 |
attgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatatt |
201 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
13670945 |
gttgctcacatctcaaggaactttgtataaaatcttgttggaaaatgaaggaaattgttgcagaggagaaagaatctagtgtgaatgcagctccggtatt |
13671044 |
T |
|
| Q |
202 |
tgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaaa |
301 |
Q |
| |
|
||| ||||||||||||| ||||||| |||||||| || || |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13671045 |
tgaatttaatcaactaagtactttattgctttggcactcacctaaactcaatggtttctatgctggaaatcatactctgctatgtccatctttgaggaaa |
13671144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 3 - 300
Target Start/End: Original strand, 13655442 - 13655739
Alignment:
| Q |
3 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattgt-gtccaaacttggagtatctattaccactctctgtagccactc |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||| | | | || || || ||| |||||| ||||||||||||||||| |||||||||| |
|
|
| T |
13655442 |
gagatcctcaaggaattcttagttttcaaaatctaatatatgtactact-agatggttgtacaagcttggaatatctattaccactctccgtagccactc |
13655540 |
T |
|
| Q |
102 |
attgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatatt |
201 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |
|
|
| T |
13655541 |
gttgctcacatctcaaggaacttggtataaaatggtgtgaaaacatgaaggaaattgttgcagaggagaaagaatctagcttgagtgcagctcccatatt |
13655640 |
T |
|
| Q |
202 |
tgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaa |
300 |
Q |
| |
|
||||||||||||||||| ||||||| | |||||| || || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13655641 |
tgagtttaatcaactaagtactttattactttggcactcacctaaactcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaa |
13655739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 3 - 297
Target Start/End: Original strand, 13506580 - 13506874
Alignment:
| Q |
3 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattgt-gtccaaacttggagtatctattaccactctctgtagccactc |
101 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| | | | || || || |||||||||||||||||||||||| |||||||||| |
|
|
| T |
13506580 |
gagatcctgaaggaattcttagttttcgaaatctaataaatgtacaact-agttagttgtagaagcttggagtatctattaccactctccgtagccactc |
13506678 |
T |
|
| Q |
102 |
attgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatatt |
201 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |
|
|
| T |
13506679 |
gttgctcacatctcaaggaacttggtataaaatggtgtgaaaacattaaggaaattgttgcagaggagaaagaatctagcttgagtgcagctcccatatt |
13506778 |
T |
|
| Q |
202 |
tgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgag |
297 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| ||||| |||| ||||||||||||||||||||||||| ||||| ||| ||||||||||| |
|
|
| T |
13506779 |
tgagtttaatcaactaagtactttattgctttggaacttacctaaactcaatggtttctatgctggaaatcatactctagcatgcccatctttgag |
13506874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 3 - 297
Target Start/End: Original strand, 13513762 - 13514056
Alignment:
| Q |
3 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattgt-gtccaaacttggagtatctattaccactctctgtagccactc |
101 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| | | | || || || |||||||||||||||||||||||| |||||||||| |
|
|
| T |
13513762 |
gagatcctgaaggaattcttagttttcgaaatctaataaatgtacaact-agttagttgtagaagcttggagtatctattaccactctccgtagccactc |
13513860 |
T |
|
| Q |
102 |
attgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatatt |
201 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |
|
|
| T |
13513861 |
gttgctcacatctcaaggaacttggtataaaatggtgtgaaaacattaaggaaattgttgcagaggagaaagaatctagcttgagtgcagctcccatatt |
13513960 |
T |
|
| Q |
202 |
tgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgag |
297 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| ||||| |||| ||||||||||||||||||||||||| ||||| ||| ||||||||||| |
|
|
| T |
13513961 |
tgagtttaatcaactaagtactttattgctttggaacttacctaaactcaatggtttctatgctggaaatcatactctagcatgcccatctttgag |
13514056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 3 - 297
Target Start/End: Original strand, 13610648 - 13610942
Alignment:
| Q |
3 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattgt-gtccaaacttggagtatctattaccactctctgtagccactc |
101 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| | | | || || ||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
13610648 |
gagatcctgaaggaattcttagttttcgaaatctaataaatgtacaact-agttagttgtacaagcttggagtatctattaccactctccgtagccactc |
13610746 |
T |
|
| Q |
102 |
attgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatatt |
201 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||||||||||| | ||||||||| ||| ||||||||||||||| |
|
|
| T |
13610747 |
gttgctcacatctcaaggaacttggtataaaatggtgtgaaaacattaaggaaattgttgcagaggaggaagaatctagcttgagtgcagctcccatatt |
13610846 |
T |
|
| Q |
202 |
tgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgag |
297 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| |||| |||| ||||||||||||||||||||||||| ||||| ||| ||||||||||| |
|
|
| T |
13610847 |
tgagtttaatcaactaagtactttattgctttggaacttaactaaactcaatggtttctatgctggaaatcatactctagcatgcccatctttgag |
13610942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 3 - 297
Target Start/End: Original strand, 13685092 - 13685386
Alignment:
| Q |
3 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaatt-gaaattgtgtccaaacttggagtatctattaccactctctgtagccactc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| | |||| | ||| ||| ||||||||||||||||||| |||| |||||||||| |
|
|
| T |
13685092 |
gagatcctgaaggaattcttagttttcaaaatctaatatatgtacaactagaaagt-tgtgcaagcttggagtatctattaccattctccgtagccactc |
13685190 |
T |
|
| Q |
102 |
attgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatatt |
201 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||| ||||| ||||||||||||||||||||||| ||||||||| ||| ||||||| ||||||| |
|
|
| T |
13685191 |
gttgctcacatctcaaggaacttgttataaaatggtgtgaaaacattaaggaaattgttgcagaggagaaagaatctagcttgagtgcagcttccatatt |
13685290 |
T |
|
| Q |
202 |
tgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgag |
297 |
Q |
| |
|
||||||||||||||| | ||||||| |||||||| |||| |||| ||||||||||||||||||||||||| ||||| ||| ||||||||||| |
|
|
| T |
13685291 |
tgagtttaatcaacttagtactttattgctttggaacttaactaaactcaatggtttctatgctggaaatcatactctagcatgcccatctttgag |
13685386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 19138078 - 19137782
Alignment:
| Q |
1 |
tagagatcctgaaggaattcttagttttcaaaatctaataaatgtacaatt-gaaattgtgtccaaacttggagtatctattaccactctctgtagccac |
99 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| || | |||| | ||| ||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
19138078 |
tagagatcctcaaggaattcttagttttcaaaatctaataaatgtaaaactagaaagt-tgtgcaagcttggagtatctattaccattctctgtagccac |
19137980 |
T |
|
| Q |
100 |
tcattgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccata |
199 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||| ||| ||||| ||||||||||||||||||||||| |||| |||| ||| ||||||||||||| |
|
|
| T |
19137979 |
tcgttgctcacatctcaaggaacttgttataaaatggtgtgaaaacattaaggaaattgttgcagaggagaaagaatttagcttgagtgcagctcccata |
19137880 |
T |
|
| Q |
200 |
tttgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgag |
297 |
Q |
| |
|
||||||||||||||||||| || |||| | |||||| || || |||| ||||||||||||||||||||||||| ||||| ||| ||||||||||| |
|
|
| T |
19137879 |
tttgagtttaatcaactaagtagtttattactttggcactcacctaaactcaatggtttctatgctggaaatcatactctagcatgcccatctttgag |
19137782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 3 - 297
Target Start/End: Original strand, 13650370 - 13650664
Alignment:
| Q |
3 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaattg--aaattgtgtccaaacttggagtatctattaccactctctgtagccact |
100 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||| || | |||||||| ||| |||||||||| |||||||| |||| |||||||| |
|
|
| T |
13650370 |
gagatccggaagaaattcttagttttcaaaatctaataaatgtaaaagtagtaaattgtg--caagcttggagtatttattaccattctccatagccact |
13650467 |
T |
|
| Q |
101 |
cattgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatat |
200 |
Q |
| |
|
| |||||||||||||||| ||||| ||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||| ||| |||||||||||||| |
|
|
| T |
13650468 |
cgttgctcacatctcaagaaacttggtataaaatggtgtgaaaacattaaggaaattgttgcagaggagaaagaatctagcttgagtgcagctcccatat |
13650567 |
T |
|
| Q |
201 |
ttgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgag |
297 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||| || || |||| ||||||||||||||||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
13650568 |
ttgagtttaatcaactaagtactttattgctttggaactcacctaaactcaatggtttctatgctggaaatcatactctagaatgtccatcattgag |
13650664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 63 - 300
Target Start/End: Original strand, 13421226 - 13421463
Alignment:
| Q |
63 |
caaacttggagtatctattaccactctctgtagccactcattgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgc |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| |
|
|
| T |
13421226 |
caaacttggagtatctattaccactctctgtagccactcgttgctcacatctcaaggaacttagtataaaatggtgtgagaacatgaagcaaattgttgg |
13421325 |
T |
|
| Q |
163 |
agaggagaatgaatctagcgtgaatgcagctcccatatttgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctat |
262 |
Q |
| |
|
||||||||| |||||||| ||||||| |||||||||||||||||||||||| |||| ||||||| |||||||| ||||| || |||| ||||||||| |
|
|
| T |
13421326 |
agaggagaaagaatctagtgtgaatgaagctcccatatttgagtttaatcagctaagtactttattgctttggaaattacacaacctcaaaggtttctat |
13421425 |
T |
|
| Q |
263 |
gctggaaatcacactctgctatgtccatctttgaggaa |
300 |
Q |
| |
|
||||||||||| ||||| ||| |||||||||||||| |
|
|
| T |
13421426 |
gctggaaatcatactctagcatgcccatctttgaggaa |
13421463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 3 - 301
Target Start/End: Complemental strand, 15898970 - 15898671
Alignment:
| Q |
3 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattgtgtccaaacttggagtatctattaccactctctgtagccactca |
102 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||| | |||| || |||||||||||| ||||||||||| ||||||| || |
|
|
| T |
15898970 |
gagatcctcaaggaattcttagttttcaaaatctaataaatatacatctagttaagtgtataagcttggagtatctgttaccactctccgtagccattcg |
15898871 |
T |
|
| Q |
103 |
ttgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcag---aggagaatgaatctagcgtgaatgcagctcccata |
199 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||| ||||||| |||||||| | ||||| |||||||||| |
|
|
| T |
15898870 |
ttgctcacatctcaaggaacttagtctaaaatattgtgtaaacatgaagga--ttgttgcagcggaggagaaagaatctagagcgaatgaagctcccata |
15898773 |
T |
|
| Q |
200 |
tttgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgagga |
299 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||| | ||||| ||||||||||||||| ||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
15898772 |
tttgagtttaatcaactaagtactttattgctttggggctcagataaactcaatggtttctatgttggaaatcatactctagcatgcccatctttgagga |
15898673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 16496851 - 16496701
Alignment:
| Q |
68 |
ttggagtatctattaccactctctgtagccactcattgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagagg |
167 |
Q |
| |
|
||||||||||||||||| || ||| |||| |||| ||| || |||||||| ||||||||| |||| |||| || |||||| |||||||||||||||| |
|
|
| T |
16496851 |
ttggagtatctattacctctttctatagcaactcgttgttctcatctcaaagaacttagtgtaaataattgtgcgagcatgaaagaaattgttgcagagg |
16496752 |
T |
|
| Q |
168 |
agaatgaatctagcgtgaatgcagctcccatatttgagtttaatcaactaa |
218 |
Q |
| |
|
|||| |||| ||| |||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
16496751 |
agaaagaatatagggtgagtgcagctcccatatttgagtttaatcatctaa |
16496701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 68 - 298
Target Start/End: Complemental strand, 16468208 - 16467978
Alignment:
| Q |
68 |
ttggagtatctattaccactctctgtagccactcattgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagagg |
167 |
Q |
| |
|
|||||||||||||||||||| ||| |||| |||| ||| || ||||||||||||||| |||||||| ||| || ||||||||||||||||||| | | |
|
|
| T |
16468208 |
ttggagtatctattaccactttctatagcaactcgttgttcccatctcaaggaacttggtataaaaaactgtgcgagcatgaaggaaattgttgcaaaag |
16468109 |
T |
|
| Q |
168 |
agaatgaatctagcgtgaatgcagctcccatatttgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctgg |
267 |
Q |
| |
|
|||| ||| ||| ||| ||| | ||| ||||||||||||||| |||||| || ||| || ||| |||| |||| |||| |||||||||||||| |
|
|
| T |
16468108 |
agaaagaaaatagtgtgtttgcggatccgatatttgagtttaataaactaagtagattaatgttttataacttaggtaaactcaaaggtttctatgctgg |
16468009 |
T |
|
| Q |
268 |
aaatcacactctgctatgtccatctttgagg |
298 |
Q |
| |
|
|||| | ||||| ||||||||||||||||| |
|
|
| T |
16468008 |
aaattatactctagtatgtccatctttgagg |
16467978 |
T |
|
Back To:
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Target: scaffold0069 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 3 - 303
Target Start/End: Original strand, 26840 - 27140
Alignment:
| Q |
3 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattgtgtccaaacttggagtatctattaccactctctgtagccactca |
102 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| | | | | ||| ||| |||||||||| ||||||| |||| |||||||||| |
|
|
| T |
26840 |
gagatccggaaggaattcttagttttcaaaatctaataaatgttcgagtactaagttgtgcaagcttggagtattcattaccattctccgtagccactcg |
26939 |
T |
|
| Q |
103 |
ttgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatattt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
26940 |
ttgctcacatctcaaggaacttagtataaaatattgtttaaacatgaaggaaattgttgcagaggagaaagaatctagtgtgaatgcagctccggtattt |
27039 |
T |
|
| Q |
203 |
gagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaaag |
302 |
Q |
| |
|
|| ||||||||| ||| ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27040 |
gaatttaatcaattaagtactttattgctttgggacttacataaactcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaaag |
27139 |
T |
|
| Q |
303 |
t |
303 |
Q |
| |
|
| |
|
|
| T |
27140 |
t |
27140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 249 - 303
Target Start/End: Original strand, 31201 - 31255
Alignment:
| Q |
249 |
tcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaaagt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201 |
tcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaaagt |
31255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 168; Significance: 6e-90; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 3 - 301
Target Start/End: Complemental strand, 40762 - 40464
Alignment:
| Q |
3 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattgt-gtccaaacttggagtatctattaccactctctgtagccactc |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| || | | || || || ||| ||||||||||||||||||| | || |||||||||| |
|
|
| T |
40762 |
gagatcctcaaggaattcttagttttcaaaatctaataaatgtagaagt-agatagttgtgcaagcttggagtatctattaccagtttccgtagccactc |
40664 |
T |
|
| Q |
102 |
attgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatatt |
201 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
40663 |
gttgctcacatctcaaggaactttacataagatattgttacaacatgaaggaaattgttgcagaggagaatgaatctagcatgaatgaagctcccatatt |
40564 |
T |
|
| Q |
202 |
tgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaaa |
301 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| | ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40563 |
tgagtttaatcaactaactactttatggcttttcggctcagataaactcagtggtttctatgctggaaatcatactctgctatgtccatctttgaggaaa |
40464 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 3 - 297
Target Start/End: Complemental strand, 38057615 - 38057321
Alignment:
| Q |
3 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattgt-gtccaaacttggagtatctattaccactctctgtagccactc |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | | || || || || |||||| |||||||||||| |||| |||||||||| |
|
|
| T |
38057615 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaact-agatggttgtagaagcttggaatatctattaccattctccgtagccactc |
38057517 |
T |
|
| Q |
102 |
attgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatatt |
201 |
Q |
| |
|
||| |||||||||||||||||| |||| |||||||| |||||||| |||||||||||||||||||| |||||||||| |||||||||||||| ||| |
|
|
| T |
38057516 |
gttgttcacatctcaaggaacttcttatacaatcttgtgcaaacatgaaagaaattgttgcagaggagaaagaatctagcgcgaatgcagctcccacatt |
38057417 |
T |
|
| Q |
202 |
tgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgag |
297 |
Q |
| |
|
||||||||||||||| | ||||||| |||||||| |||||||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||| |
|
|
| T |
38057416 |
tgagtttaatcaactgagtactttattgctttggaacttacataaactcaatggtttctatgctagaaatcatactctgctatgtccatgtttgag |
38057321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 3 - 296
Target Start/End: Complemental strand, 22283822 - 22283529
Alignment:
| Q |
3 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattg--tgtccaaacttggagtatctattaccactctctgtagccact |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| ||| ||| |||| | || || ||||||| ||||||||||||||||||||| || ||||||||| |
|
|
| T |
22283822 |
gagatcttgaaggaattcttagttttcaag--ctattaattgtgcaatcgtaaatgaatgtccaagcttggagtatctattaccactttccgtagccact |
22283725 |
T |
|
| Q |
101 |
cattgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatat |
200 |
Q |
| |
|
| |||||||||||| ||||||||| |||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22283724 |
cgttgctcacatctgaaggaacttgatataaaggattgtcagaacatgaaggaaattgttgcagaggagaaagaatctagcgtgaatgcagctcccatat |
22283625 |
T |
|
| Q |
201 |
ttgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttga |
296 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||| |||| | ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22283624 |
ttgagtttaatcaactaactactttattgctttggggcttaaataaactcaacagcttctatgctggaaatcacactctagtatgtccatctttga |
22283529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 4 - 296
Target Start/End: Original strand, 21814730 - 21815022
Alignment:
| Q |
4 |
agatcctgaaggaattcttagttttcaaaatctaataaatgtacaatt-gaaattgtgtccaaacttggagtatctattaccactctctgtagccactca |
102 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |||| ||||||| | | || | ||| || |||||||||| || ||||| |||| |||||||||| |
|
|
| T |
21814730 |
agatcctcaagggattcttagttttcaaaatcttataactgtacaagtagtaagt-tgtgaaagcttggagtatttactaccattctccgtagccactcg |
21814828 |
T |
|
| Q |
103 |
ttgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatattt |
202 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
21814829 |
ttgctcacatcttaagaaactcggtataaaatggtgtcggaacatgaagcaaattgttgcagaggagaaagaatctagagtgaatgcagctaccatattt |
21814928 |
T |
|
| Q |
203 |
gagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttga |
296 |
Q |
| |
|
|||||||| || || | || |||| |||||||||||||| ||||| ||||||||||||||||||||||||| ||||| ||| |||||||||| |
|
|
| T |
21814929 |
gagtttaaccagcttagtattttattgctttggggcttatataaactcaatggtttctatgctggaaatcatactctagcatgcccatctttga |
21815022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0783 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: scaffold0783
Description:
Target: scaffold0783; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 141 - 303
Target Start/End: Original strand, 1 - 163
Alignment:
| Q |
141 |
ggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatatttgagtttaatcaactaactactttactgctttggggctt |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1 |
ggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatatttgagtttaatcaactaactactttactgctttggtactt |
100 |
T |
|
| Q |
241 |
acataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaaagt |
303 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
101 |
agaagaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaaagt |
163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 3 - 300
Target Start/End: Complemental strand, 20814579 - 20814282
Alignment:
| Q |
3 |
gagatcctgaaggaattcttagttttcaaaatctaataaatgtacaattg--aaattgtgtccaaacttggagtatctattaccactctctgtagccact |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||| | |||||||| | |||||||||| |||||||| |||| ||||| ||| |
|
|
| T |
20814579 |
gagatccggaaggaattcttagttttcaaaatctaataaatgttcaagtagtaaattgtgat--agcttggagtatttattaccattctccgtagctact |
20814482 |
T |
|
| Q |
101 |
cattgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggagaatgaatctagcgtgaatgcagctcccatat |
200 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||| ||||||||| ||||||||| |||||| || |||||||| |
|
|
| T |
20814481 |
cgttgctcacatctcaaggaacttggtataaaatggtgtgggaacatgaagctaattgttggagaggagaaagaatctagcatgaatgaagatcccatat |
20814382 |
T |
|
| Q |
201 |
ttgagtttaatcaactaactactttactgctttggggcttacataaattcaatggtttctatgctggaaatcacactctgctatgtccatctttgaggaa |
300 |
Q |
| |
|
|||||||||||||||||| ||||||| | |||| || || |||| ||||||||||||||||||||||||| ||||| |||| |||| |||||||| |
|
|
| T |
20814381 |
ttgagtttaatcaactaagtactttattactttttcactcacctaaactcaatggtttctatgctggaaatcatactctagaatgttcatcattgaggaa |
20814282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 4 - 169
Target Start/End: Complemental strand, 7596 - 7431
Alignment:
| Q |
4 |
agatcctgaaggaattcttagttttcaaaatctaataaatgtacaattgaaattgtgtccaaacttggagtatctattaccactctctgtagccactcat |
103 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| ||| ||||||||| |||||||| | |
|
|
| T |
7596 |
agatcctcaagggattcttagttttcaaaatctaataaatgtacaattgaaggggtgtgcaagcttggagtatctgttaacactctctgcagccactcgt |
7497 |
T |
|
| Q |
104 |
tgctcacatctcaaggaacttagtataaaatcttgttggaacatgaaggaaattgttgcagaggag |
169 |
Q |
| |
|
||||||||||||||||||||| | |||| | | ||| ||||||||| ||||||||||||||||| |
|
|
| T |
7496 |
tgctcacatctcaaggaactttggataagagatcgttacaacatgaagcaaattgttgcagaggag |
7431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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