View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_25 (Length: 370)
Name: NF1394_low_25
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 98 - 306
Target Start/End: Complemental strand, 49085968 - 49085756
Alignment:
| Q |
98 |
tcatcgttattagacataagcatactagttaaaccacagccctaacaagtaagatttaca----cgaggtacaataaaaaattcaaatcaatcactacat |
193 |
Q |
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| T |
49085968 |
tcatcgttattagacataagcatgctagttaaaccacagccctaacaagtaagatttaaataaacgaggtacaataaaaaattcaaatcaatcactacat |
49085869 |
T |
|
| Q |
194 |
aataattacaatcctaaatttgtaggagacagtcaatgagtcaatataattaacaaacaagccgacagaaagcactaaaaatgctattaaaaacaatttc |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49085868 |
aataattacaatcctaaatttgtaggagacagtcaatgagtcaatgtaattaacaaacaagccgacagaaagcactaaaaatgctattaaaaacaatttg |
49085769 |
T |
|
| Q |
294 |
atctcactcgacc |
306 |
Q |
| |
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|| ||||| |||| |
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| T |
49085768 |
atttcactagacc |
49085756 |
T |
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