View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_26 (Length: 361)
Name: NF1394_low_26
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 74 - 333
Target Start/End: Complemental strand, 46807811 - 46807539
Alignment:
| Q |
74 |
atgaacaaaattgaggaatttggctagtttcattaggttatgaacagtttgggctgcatggatgacacattgggtgcgtacgtgttttaacgcatggaat |
173 |
Q |
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| T |
46807811 |
atgaacaaaattgaggaatttggctagtttcattaggttatgaacagtttgggctgcatggatgacacattgggtgcgtacgtgttttaacgcatggaat |
46807712 |
T |
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| Q |
174 |
ttggggtccaatccatttgaatttacatggatgcggcgatcatgatctgtgtactgaacttttgagtttgtgaag--ttgttttaatttgatgaacctgg |
271 |
Q |
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| T |
46807711 |
ttggggtccaatccatttgaatttacatggatgcggcgatcatgatctgtgtactgaacttttgagtttgtgaagttttgttttaatttgatgaacctgg |
46807612 |
T |
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| Q |
272 |
acattctttcagaaaagtgagtt-----------ttgaatttttatcattttatgcatgtgagtgaagcaact |
333 |
Q |
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| T |
46807611 |
acattctttcagaaaagtgagttttcgctactggttgaatttttatcattttatgcatgtgagtgaagcaact |
46807539 |
T |
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