View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_27 (Length: 345)
Name: NF1394_low_27
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 49 - 319
Target Start/End: Original strand, 48390438 - 48390708
Alignment:
| Q |
49 |
tccatattctacttctactaggagtatagtttatgtagtggtaatatattataataaagcgtggtgtcttgtttttgggtcccaagccatatgccacttt |
148 |
Q |
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| T |
48390438 |
tccatgttctacttctactaggagtatagtttatgtagtggtaatatattataataaagcgtggtgtcttgtttttgggtcccaagccatatgccacttt |
48390537 |
T |
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| Q |
149 |
ctttggtctaccaagcaaccttactctttacgcacacaaaggcacgtgcaatacagatttgggttcataaagaaatatatcatgacatggagatatcaga |
248 |
Q |
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| T |
48390538 |
ctttggtctaccaagcaaccttactctttacgcacacaaaggcacgtgcaatacagatttgggttcataaagaaatatatcatgacatggagatatcaga |
48390637 |
T |
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| Q |
249 |
aatgagcactcatatgtaagaacgtagttaaaccgagtcatcttcttgattggtgtgtgtgatctgtggtg |
319 |
Q |
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| T |
48390638 |
aatgagcactcatatgtaagaacgtagttaaaccgagtcatcttcttgattggtgtgtgtgatcagtggtg |
48390708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 83
Target Start/End: Original strand, 17820722 - 17820750
Alignment:
| Q |
55 |
ttctacttctactaggagtatagtttatg |
83 |
Q |
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| T |
17820722 |
ttctacttctactaggagtatagtttatg |
17820750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 83
Target Start/End: Original strand, 17860892 - 17860920
Alignment:
| Q |
55 |
ttctacttctactaggagtatagtttatg |
83 |
Q |
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| T |
17860892 |
ttctacttctactaggagtatagtttatg |
17860920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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