View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1394_low_28 (Length: 334)
Name: NF1394_low_28
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_28 |
 | |
|
| [»] scaffold0361 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0361 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 29 - 323
Target Start/End: Original strand, 11774 - 12068
Alignment:
| Q |
29 |
aaaccatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttctttttaagtcaattgtctccttagctg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11774 |
aaaccatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttctttttaagtcaattgtctccttagctg |
11873 |
T |
|
| Q |
129 |
cctttggttccggaattgtagtctcgttttcagaatcaactaaaccagaaaaaacacaatccgttaattagcgcggaatcaataaatnnnnnnnntcctt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11874 |
cctttggttccggaattgtagtctcgttttcagaatcaactaaaccagaaaaaacacaatccgttaattagcgcggaatcaataaataaataaaatcctt |
11973 |
T |
|
| Q |
229 |
ggttaaaaatttcaacaaaaaagtgtattgtcaggcagaacatacgatataatggaatgcatgaaaaatcagatggcaaagtaacactagttcat |
323 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11974 |
ggttaaaaatttcaacaaaaacttgtattgtcaggcagaacatacgatataatggaatgcatgaaaaatcagatggcaaagtaacactagttcat |
12068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 29 - 314
Target Start/End: Original strand, 4947102 - 4947385
Alignment:
| Q |
29 |
aaaccatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttctttttaagtcaattgtctccttagctg |
128 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4947102 |
aaacaatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttctttt-aagtcaattgtctccttagcca |
4947200 |
T |
|
| Q |
129 |
cctttggttccggaattgtagtctcgttttcagaatcaactaaaccagaaaaaacacaatccgttaattagcgcggaatcaataaatnnnnnnnntcctt |
228 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| ||| | |||||||||||| || || |
|
|
| T |
4947201 |
cctttggttccggaattgtagtctcattttcagaatcgactaaaccagaagaaacacaatccgttaatgagcacagaatcaataaat-aaaaaaatcatt |
4947299 |
T |
|
| Q |
229 |
ggttaaaaatttcaacaaaaaagtgtattgtcaggcagaacatacgatataatggaatgcatgaaaaatcagatggcaaagtaaca |
314 |
Q |
| |
|
|||||||||||||||||| || ||| |||| ||||||||||||| |||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
4947300 |
ggttaaaaatttcaacaagaacgtgaattggcaggcagaacataagatataatggaatgcatgaaaaataaaatggcaaagtaaca |
4947385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University