View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_29 (Length: 333)
Name: NF1394_low_29
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_29 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: scaffold0361 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 29 - 322
Target Start/End: Original strand, 11774 - 12068
Alignment:
| Q |
29 |
aaaccatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttctttttaagtcaattgtctccttagctg |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11774 |
aaaccatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttctttttaagtcaattgtctccttagctg |
11873 |
T |
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| Q |
129 |
cctttggttccggaattgtagtctcgttttcagaatcaactaaaccagaaaaaacacaatccgttaattagcgcggaatcaataaat-nnnnnnntcctt |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11874 |
cctttggttccggaattgtagtctcgttttcagaatcaactaaaccagaaaaaacacaatccgttaattagcgcggaatcaataaataaataaaatcctt |
11973 |
T |
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| Q |
228 |
ggttaaaaatttcaacaaaaaagtgtattgtcaggcagaacatacgatataatggaatgcatgaaaaatcagatggcaaagtaacactagttcat |
322 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11974 |
ggttaaaaatttcaacaaaaacttgtattgtcaggcagaacatacgatataatggaatgcatgaaaaatcagatggcaaagtaacactagttcat |
12068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 29 - 313
Target Start/End: Original strand, 4947102 - 4947385
Alignment:
| Q |
29 |
aaaccatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttctttttaagtcaattgtctccttagctg |
128 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4947102 |
aaacaatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttctttt-aagtcaattgtctccttagcca |
4947200 |
T |
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| Q |
129 |
cctttggttccggaattgtagtctcgttttcagaatcaactaaaccagaaaaaacacaatccgttaattagcgcggaatcaataaatnnnnnnntccttg |
228 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| ||| | |||||||||||| || ||| |
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| T |
4947201 |
cctttggttccggaattgtagtctcattttcagaatcgactaaaccagaagaaacacaatccgttaatgagcacagaatcaataaataaaaaaatcattg |
4947300 |
T |
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| Q |
229 |
gttaaaaatttcaacaaaaaagtgtattgtcaggcagaacatacgatataatggaatgcatgaaaaatcagatggcaaagtaaca |
313 |
Q |
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||||||||||||||||| || ||| |||| ||||||||||||| |||||||||||||||||||||||| | |||||||||||||| |
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| T |
4947301 |
gttaaaaatttcaacaagaacgtgaattggcaggcagaacataagatataatggaatgcatgaaaaataaaatggcaaagtaaca |
4947385 |
T |
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