View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1394_low_31 (Length: 319)
Name: NF1394_low_31
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6325119 - 6325192
Alignment:
| Q |
1 |
aaaaagaaaaccatgcaaatcaatcatttttaaaaagcattttcttaattgagaatgtttaaaagtacatttaa |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6325119 |
aaaaagaaaaccatgcaaatcaatcatttttaaaaagcattttcttaattgagaatgtttaaaagtacatttaa |
6325192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 6325198 - 6325230
Alignment:
| Q |
99 |
aaaaatttcaaatgaacattttatatcttacag |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
6325198 |
aaaaatttcaaatgaacattttatatcttacag |
6325230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University