View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_32 (Length: 319)
Name: NF1394_low_32
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_32 |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0316 (1 HSPs) |
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| [»] scaffold0356 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 81 - 225
Target Start/End: Original strand, 11817675 - 11817819
Alignment:
| Q |
81 |
ccaataatataaactactaaaaagttcaaaatttaaaaatcaagacctctagtcaattttattgattcattaaaaccatctctaaagatttagaaagttt |
180 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11817675 |
ccaataatgtaaactactaaaaagttcaaaatttaaaaatcaagacctctagccaattttattgattcattaaaaccatctctaaagatttagaaagttt |
11817774 |
T |
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| Q |
181 |
gtctctattcatgtgccacacaaagtcatagggcgaaggatttga |
225 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11817775 |
gtctctattcatgtcccacacaaagtcatagggcgaaggatttga |
11817819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 41759245 - 41759116
Alignment:
| Q |
95 |
tactaaaaagttcaaaatttaaaaatcaagacctctagtcaattttattgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgt |
194 |
Q |
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||||||||| ||||||| ||||||||||| | | || |||| || |||||||||||||||||| |||||||||| ||||| || |||| | ||||| | |
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| T |
41759245 |
tactaaaaaattcaaaaattaaaaatcaaaattgcaagacaatctt-ttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatat |
41759147 |
T |
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| Q |
195 |
gccacacaaagtcatagggcgaaggatttga |
225 |
Q |
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|||||||||||||||||| ||||||||||| |
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| T |
41759146 |
cccacacaaagtcatagggtgaaggatttga |
41759116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 81 - 225
Target Start/End: Original strand, 190702 - 190846
Alignment:
| Q |
81 |
ccaataatataaactactaaaaagttcaaaatttaaaaatcaagacctctagtcaattttattgattcattaaaaccatctctaaagatttagaaagttt |
180 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
190702 |
ccaataatgtaaactactaaaaagttcaaaatttaaaaatcaagacctctagccaattttattgattcattaaaaccatctctaaagatttagaaagttt |
190801 |
T |
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| Q |
181 |
gtctctattcatgtgccacacaaagtcatagggcgaaggatttga |
225 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
190802 |
gtctctattcatgtcccacagaaagtcatagggcgaaggatttga |
190846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 81 - 225
Target Start/End: Original strand, 5877 - 6020
Alignment:
| Q |
81 |
ccaataatataaactactaaaaagttcaaaattt-aaaaatcaagacctctagtcaattttattgattcattaaaaccatctctaaagatttagaaagtt |
179 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||| | | || |||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
5877 |
ccaataatgtaaactactaaaaagttcaaaattttaaaaatcaaaattgcaagccaattttattgattcattaaaaccttct--aaagatttagaaagtt |
5974 |
T |
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| Q |
180 |
tgtctctattcatgtgccacacaaagtcatagggcgaaggatttga |
225 |
Q |
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||||||||||||||| |||||||||||||||| | ||||||||||| |
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| T |
5975 |
tgtctctattcatgtcccacacaaagtcatagagtgaaggatttga |
6020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0356 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 4937 - 4808
Alignment:
| Q |
95 |
tactaaaaagttcaaaatttaaaaatcaagacctctagtcaattttattgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgt |
194 |
Q |
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||||||||| ||||||| ||||||||||| | | || |||| || |||||||||||||||||| |||||||||| ||||| || |||| | ||||| | |
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| T |
4937 |
tactaaaaaattcaaaaattaaaaatcaaaattgcaagacaatctt-ttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatat |
4839 |
T |
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| Q |
195 |
gccacacaaagtcatagggcgaaggatttga |
225 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
4838 |
cccacacaaagtcatagggcgaaggatttga |
4808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 14107515 - 14107386
Alignment:
| Q |
95 |
tactaaaaagttcaaaatttaaaaatcaagacctctagtcaattttattgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgt |
194 |
Q |
| |
|
||||||||| ||||||| ||||||||||| | | || |||| || |||||||||||||||||| |||||||||| ||||| || |||| | ||||| | |
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| T |
14107515 |
tactaaaaaattcaaaaattaaaaatcaaaattgcaagacaatctt-ttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatat |
14107417 |
T |
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| Q |
195 |
gccacacaaagtcatagggcgaaggatttga |
225 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
14107416 |
cccacacaaagtcatagggcgaaggatttga |
14107386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 33857263 - 33857134
Alignment:
| Q |
95 |
tactaaaaagttcaaaatttaaaaatcaagacctctagtcaattttattgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgt |
194 |
Q |
| |
|
||||||||| ||||||| ||||||||||| | | || |||| || |||||||||||||||||| |||||||||| ||||| || |||| | ||||| | |
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| T |
33857263 |
tactaaaaaattcaaaaattaaaaatcaaaattgcaagacaatctt-ttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatat |
33857165 |
T |
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| Q |
195 |
gccacacaaagtcatagggcgaaggatttga |
225 |
Q |
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|||||||||||||||||| ||||||||||| |
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| T |
33857164 |
cccacacaaagtcatagggtgaaggatttga |
33857134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 31925806 - 31925935
Alignment:
| Q |
95 |
tactaaaaagttcaaaatttaaaaatcaagacctctagtcaattttattgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgt |
194 |
Q |
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|
||||||||| ||||||| ||||||||||| | | || |||| || |||||||||||||||||| |||||||||| ||||| || |||| | ||||| | |
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| T |
31925806 |
tactaaaaaattcaaaaattaaaaatcaaaattgcaagacaatctt-ttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatat |
31925904 |
T |
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| Q |
195 |
gccacacaaagtcatagggcgaaggatttga |
225 |
Q |
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|||||||||||||||||| ||||||||||| |
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| T |
31925905 |
cccacacaaagtcatagggtgaaggatttga |
31925935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 16046063 - 16046146
Alignment:
| Q |
142 |
ttgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgtgccacacaaagtcatagggcgaaggatttga |
225 |
Q |
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|||||||||||||||||| |||||||||| ||||| || |||| | ||||| | ||||||| ||||||||||||||| |||||| |
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| T |
16046063 |
ttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacacagtcatagggcgaagaatttga |
16046146 |
T |
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