View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_34 (Length: 314)
Name: NF1394_low_34
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 87 - 241
Target Start/End: Complemental strand, 22296251 - 22296097
Alignment:
| Q |
87 |
ccaagcacaaaattttgtcattttcttttgcacttaactataaagaactatttgaatgtaatgcatttttgtatatatcagatgcatatgtggggacatg |
186 |
Q |
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| T |
22296251 |
ccaagcacaaaattttgtcattttcttttgcacttaactataaagaactatttgaatgtaatgcatttatgtatatatcagatgcatatgtggggacatg |
22296152 |
T |
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| Q |
187 |
gatcacaatacagaaaaggaccagaatctctaagaggagtaaaaccagcttcatc |
241 |
Q |
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| T |
22296151 |
gatcacaatacagaaaaggaccagaatctctaagaggagtaaaaccagcttcatc |
22296097 |
T |
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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 21035942 - 21035883
Alignment:
| Q |
164 |
tcagatgcatatgtggggacatggatcacaatacagaaaaggaccagaatctctaagagg |
223 |
Q |
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| T |
21035942 |
tcagatgcatatgtggggacatggatcacaatacagaaaaggaccagaatctctaagagg |
21035883 |
T |
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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 41939757 - 41939833
Alignment:
| Q |
166 |
agatgcatatgtggggacatggatcacaatacagaaaaggaccagaatctctaagaggagtaaaaccagcttcatct |
242 |
Q |
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| T |
41939757 |
agatgcatatgtggggacatggatctcaatataggaaaggaccggagtctctaaaagggccaaaaccagcatcatct |
41939833 |
T |
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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 41939329 - 41939387
Alignment:
| Q |
166 |
agatgcatatgtggggacatggatcacaatacagaaaaggaccagaatctctaagagga |
224 |
Q |
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| T |
41939329 |
agatgcatatgtggggacatggatcacaatatagaaagggaccagaatctctaagagga |
41939387 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 36569840 - 36569897
Alignment:
| Q |
166 |
agatgcatatgtggggacatggatcacaatacagaaaaggaccagaatctctaagagg |
223 |
Q |
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| T |
36569840 |
agatgcatatgtgggggcatggatcacagtacagaaaaggtcctgaatctctaagagg |
36569897 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 13517028 - 13516968
Alignment:
| Q |
164 |
tcagatgcatatgtggggacatggatcacaatacagaaaaggaccagaatctctaagagga |
224 |
Q |
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| T |
13517028 |
tcagatgcatatgtggggacatggatctcaatacagaaaggggccagattctctaaaagga |
13516968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 13606561 - 13606501
Alignment:
| Q |
164 |
tcagatgcatatgtggggacatggatcacaatacagaaaaggaccagaatctctaagagga |
224 |
Q |
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||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||| |||| |
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| T |
13606561 |
tcagatgcatatgtggggacatggatctcaatacagaaaggggccagattctctaaaagga |
13606501 |
T |
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