View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_39 (Length: 295)
Name: NF1394_low_39
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 41 - 286
Target Start/End: Complemental strand, 52591981 - 52591736
Alignment:
| Q |
41 |
tgatgagatagttaatgtccgaaagcaacgtggaatggaagagcaagaaaaaatccgcaacattggattggataatcccaaagatagtgatggaaaatct |
140 |
Q |
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| T |
52591981 |
tgatgagatagttaatgtccgaaagcaacgtggaatggaaaagcaagaaacaatccgcaacattggattggataatcccaaagatagtgatggaaaatct |
52591882 |
T |
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| Q |
141 |
attagtcagtctatgcaaataacttcagggggacctaatgatcctaattccaatccttcttgtgaaatatcctcagccgaaagacagaatttgttggata |
240 |
Q |
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| T |
52591881 |
attagtcagtctatgcaaataacttcagggggacctaatgatcctaattccaatccttcttgtgaaatatcctcagccgaaagacagaatttgttggata |
52591782 |
T |
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| Q |
241 |
agaagacaaagcttttgtccatgttggatgaggtaaccatattatt |
286 |
Q |
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| T |
52591781 |
agaagacaaagcttttgtccatgttggatgaggtaatcatattatt |
52591736 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40805861 - 40805898
Alignment:
| Q |
1 |
tttcaattaaaataattaagtaaaaagttggtattata |
38 |
Q |
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| T |
40805861 |
tttcaattaaaataattaagtaaaaagttggtattata |
40805898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 7302930 - 7302877
Alignment:
| Q |
223 |
gacagaatttgttggataagaagacaaagcttttgtccatgttggatgaggtaa |
276 |
Q |
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| T |
7302930 |
gacagcatttattggacaagaaaacaaaacttttgtccatgttggatgaggtaa |
7302877 |
T |
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