View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1394_low_4 (Length: 475)

Name: NF1394_low_4
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1394_low_4
NF1394_low_4
[»] chr5 (17 HSPs)
chr5 (80-365)||(4369240-4369525)
chr5 (365-411)||(6618113-6618159)
chr5 (365-411)||(10376997-10377043)
chr5 (365-411)||(21571932-21571978)
chr5 (358-411)||(18932576-18932629)
chr5 (363-411)||(6922073-6922121)
chr5 (364-411)||(37632519-37632566)
chr5 (365-411)||(6620456-6620502)
chr5 (365-411)||(24075194-24075240)
chr5 (365-411)||(37500562-37500608)
chr5 (364-411)||(37808550-37808597)
chr5 (365-403)||(5772548-5772586)
chr5 (365-409)||(42380972-42381016)
chr5 (368-399)||(6616772-6616803)
chr5 (358-403)||(13569587-13569632)
chr5 (365-406)||(35683291-35683332)
chr5 (363-411)||(29691872-29691920)
[»] scaffold0136 (1 HSPs)
scaffold0136 (363-411)||(13814-13862)
[»] chr8 (16 HSPs)
chr8 (363-411)||(28722863-28722911)
chr8 (363-411)||(28730505-28730553)
chr8 (363-411)||(30591773-30591821)
chr8 (365-411)||(34324286-34324332)
chr8 (363-411)||(26851640-26851688)
chr8 (367-411)||(37805593-37805637)
chr8 (365-411)||(42578418-42578464)
chr8 (363-404)||(21258801-21258842)
chr8 (363-406)||(1839987-1840030)
chr8 (365-411)||(4857305-4857351)
chr8 (363-411)||(19384134-19384182)
chr8 (366-406)||(23932367-23932407)
chr8 (363-411)||(28715520-28715568)
chr8 (369-411)||(23676063-23676105)
chr8 (365-406)||(1839638-1839679)
chr8 (365-406)||(23932725-23932766)
[»] chr7 (19 HSPs)
chr7 (363-411)||(37572074-37572122)
chr7 (365-411)||(2130117-2130163)
chr7 (365-411)||(20539837-20539883)
chr7 (363-411)||(18946601-18946649)
chr7 (363-411)||(20948884-20948932)
chr7 (363-411)||(26923432-26923480)
chr7 (363-410)||(34379246-34379293)
chr7 (365-411)||(27747612-27747658)
chr7 (365-411)||(48567474-48567520)
chr7 (363-411)||(11561741-11561789)
chr7 (363-411)||(12088011-12088059)
chr7 (369-411)||(27085823-27085865)
chr7 (369-411)||(27192436-27192478)
chr7 (365-406)||(42254190-42254231)
chr7 (368-411)||(40665481-40665524)
chr7 (363-406)||(42253830-42253873)
chr7 (365-403)||(32650209-32650247)
chr7 (363-412)||(24139647-24139696)
chr7 (366-402)||(38189971-38190007)
[»] chr6 (13 HSPs)
chr6 (363-411)||(16803018-16803066)
chr6 (365-411)||(4584290-4584336)
chr6 (365-411)||(5401159-5401205)
chr6 (365-411)||(25361360-25361406)
chr6 (365-411)||(28301857-28301903)
chr6 (365-411)||(28510170-28510216)
chr6 (363-411)||(23303623-23303671)
chr6 (364-411)||(30801697-30801744)
chr6 (363-404)||(1390277-1390318)
chr6 (365-409)||(29732793-29732837)
chr6 (363-406)||(32719115-32719158)
chr6 (365-411)||(26629619-26629664)
chr6 (365-411)||(26735595-26735640)
[»] chr4 (32 HSPs)
chr4 (363-411)||(8084994-8085042)
chr4 (363-411)||(44232991-44233039)
chr4 (363-411)||(56205255-56205303)
chr4 (363-411)||(18689816-18689864)
chr4 (363-411)||(19512503-19512551)
chr4 (363-411)||(28511494-28511542)
chr4 (363-411)||(40632290-40632338)
chr4 (363-411)||(49050108-49050156)
chr4 (363-411)||(1359461-1359509)
chr4 (363-411)||(7880605-7880653)
chr4 (363-411)||(12685880-12685928)
chr4 (363-411)||(22457477-22457525)
chr4 (363-411)||(31991218-31991266)
chr4 (363-411)||(36971069-36971117)
chr4 (358-403)||(9392199-9392244)
chr4 (363-404)||(38024778-38024819)
chr4 (363-406)||(29114059-29114102)
chr4 (365-411)||(7312367-7312413)
chr4 (367-409)||(36089292-36089334)
chr4 (369-411)||(45289018-45289060)
chr4 (365-411)||(50948002-50948047)
chr4 (365-406)||(33500743-33500784)
chr4 (363-411)||(22450916-22450964)
chr4 (363-406)||(38136650-38136693)
chr4 (365-404)||(41548740-41548779)
chr4 (365-411)||(21357549-21357595)
chr4 (367-401)||(23919394-23919428)
chr4 (364-406)||(30198588-30198630)
chr4 (365-406)||(16318840-16318881)
chr4 (365-406)||(48620502-48620543)
chr4 (367-411)||(16318491-16318535)
chr4 (373-409)||(52323603-52323639)
[»] chr3 (26 HSPs)
chr3 (363-411)||(4604051-4604099)
chr3 (363-411)||(13279109-13279157)
chr3 (365-411)||(31165081-31165127)
chr3 (361-410)||(33149194-33149243)
chr3 (363-411)||(5630586-5630634)
chr3 (365-411)||(8410685-8410731)
chr3 (365-411)||(48868908-48868954)
chr3 (365-411)||(55349558-55349604)
chr3 (363-411)||(13279412-13279460)
chr3 (363-411)||(16867258-16867306)
chr3 (365-411)||(29451537-29451583)
chr3 (365-411)||(41717997-41718043)
chr3 (365-411)||(53253772-53253818)
chr3 (364-411)||(52786205-52786252)
chr3 (364-411)||(52792469-52792516)
chr3 (365-403)||(53664426-53664464)
chr3 (365-406)||(5939599-5939640)
chr3 (363-411)||(19010342-19010391)
chr3 (365-406)||(44400921-44400962)
chr3 (365-406)||(48908710-48908751)
chr3 (363-406)||(37673969-37674012)
chr3 (377-411)||(7050428-7050462)
chr3 (365-406)||(517797-517838)
chr3 (365-406)||(33944458-33944499)
chr3 (364-396)||(35282960-35282992)
chr3 (362-394)||(38639468-38639500)
[»] chr2 (19 HSPs)
chr2 (363-411)||(2981454-2981502)
chr2 (363-411)||(31369037-31369085)
chr2 (365-411)||(32062290-32062336)
chr2 (363-411)||(22333950-22333998)
chr2 (365-411)||(20285845-20285891)
chr2 (365-411)||(20291129-20291175)
chr2 (371-411)||(19383141-19383181)
chr2 (363-411)||(35558794-35558842)
chr2 (365-411)||(36556094-36556140)
chr2 (365-406)||(1365045-1365086)
chr2 (363-404)||(11515268-11515309)
chr2 (363-408)||(35541455-35541500)
chr2 (363-411)||(37916586-37916634)
chr2 (365-408)||(30725743-30725786)
chr2 (365-406)||(13018296-13018337)
chr2 (365-406)||(43572362-43572403)
chr2 (363-411)||(11914154-11914202)
chr2 (373-411)||(1855207-1855245)
chr2 (358-402)||(36870128-36870172)
[»] chr1 (23 HSPs)
chr1 (363-411)||(48187519-48187567)
chr1 (365-411)||(27273223-27273269)
chr1 (365-411)||(28727518-28727564)
chr1 (363-411)||(9198058-9198106)
chr1 (365-411)||(17169942-17169988)
chr1 (363-411)||(14754945-14754993)
chr1 (363-404)||(5584734-5584775)
chr1 (363-404)||(7877449-7877490)
chr1 (366-411)||(13425857-13425902)
chr1 (366-411)||(48189667-48189712)
chr1 (363-403)||(49534515-49534555)
chr1 (363-406)||(2909339-2909382)
chr1 (365-404)||(18421075-18421114)
chr1 (365-406)||(37649434-37649475)
chr1 (365-406)||(40136437-40136478)
chr1 (363-403)||(34154154-34154194)
chr1 (363-411)||(44773972-44774020)
chr1 (366-404)||(44699791-44699829)
chr1 (363-404)||(7186844-7186885)
chr1 (361-394)||(52073628-52073661)
chr1 (363-399)||(38795504-38795540)
chr1 (363-399)||(41432946-41432982)
chr1 (363-399)||(47742406-47742442)
[»] scaffold0087 (1 HSPs)
scaffold0087 (363-411)||(9919-9967)
[»] scaffold0063 (1 HSPs)
scaffold0063 (363-411)||(4046-4094)
[»] scaffold0048 (2 HSPs)
scaffold0048 (363-411)||(44376-44424)
scaffold0048 (366-403)||(72411-72448)
[»] scaffold0061 (1 HSPs)
scaffold0061 (365-411)||(46558-46604)
[»] scaffold0017 (1 HSPs)
scaffold0017 (365-411)||(152183-152229)
[»] scaffold0131 (1 HSPs)
scaffold0131 (363-411)||(4931-4979)
[»] scaffold0223 (1 HSPs)
scaffold0223 (365-409)||(23101-23145)
[»] scaffold0210 (1 HSPs)
scaffold0210 (363-411)||(14405-14452)
[»] scaffold0128 (1 HSPs)
scaffold0128 (364-406)||(26603-26645)
[»] scaffold0031 (1 HSPs)
scaffold0031 (365-402)||(93313-93350)
[»] scaffold0084 (1 HSPs)
scaffold0084 (363-411)||(4419-4467)


Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 80 - 365
Target Start/End: Original strand, 4369240 - 4369525
Alignment:
Q  80 aggtttctacttatttcactcaagtgcttgactagaggagcacaagtggagaagctataaccgatcggatgattgtagagaaaatcatctgaagtttgcc 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4369240 aggtttctacttatttcactcaagtgcttgactagaggagcacaagtggagaagctataaccgatcggatgattgtagagaaaatcatctgaagtttgcc 4369339  T
Q  180 tagagaatatgatcacgttgttgcggccattggagagtcaaaaaatttggaggatatgaagagctccaaagctctttggaatcacatgaaaagggtttag 279  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4369340 tagagaatatgatcacgttgttgcggccattggagagtaaaaaattttggaggatatgaagagctccaaagctctttgaaatcacatgaaaagggtttag 4369439  T
Q  280 gattttacaaaaagatccgcttcaagaactggagaccaagccttgcatgtacttatgtcaaagcgaggtggtgatgagaacagtaa 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4369440 gattttacaaaaagatccgcttcaagaactggagaccaagccttgcgtgtacttatgtcaaagcgaggtggtgatgagaacagtaa 4369525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 6618159 - 6618113
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  6618159 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 6618113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 10376997 - 10377043
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  10376997 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 10377043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 21571932 - 21571978
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21571932 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 21571978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 358 - 411
Target Start/End: Complemental strand, 18932629 - 18932576
Alignment:
Q  358 aacagtaaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18932629 aacattaaggctttgtttgcgagttttgaggggaatgaaaggaaaggctaagga 18932576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 6922121 - 6922073
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6922121 taaggctttgtttgcgagttttgaggggaaggaaaggaaagactaagga 6922073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 37632566 - 37632519
Alignment:
Q  364 aaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37632566 aaggctttgtttgcgagttttgaggggaatgaaaggaaaggctaagga 37632519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 6620502 - 6620456
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  6620502 aggctttgtttgcgagttttgaggggaagggaaggaaaggctaagga 6620456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 24075194 - 24075240
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  24075194 aggctttgtttgcgagttttgaggggaaggaaaagaaaggctaagga 24075240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 37500562 - 37500608
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  37500562 aggctttgtttgcgagttttaaggggaaggaaaggaaaggctaagga 37500608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 37808597 - 37808550
Alignment:
Q  364 aaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  37808597 aaggccttgtttgcgagttttgaggggaatgaaaggaaaggctaagga 37808550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 403
Target Start/End: Original strand, 5772548 - 5772586
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaag 403  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  5772548 aggctttgtttgcgagtttggaggggaaggaaaggaaag 5772586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 42381016 - 42380972
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaag 409  Q
    ||||||||||||||||||||||| |||| ||||||||||| ||||    
T  42381016 aggctttgtttgcgagttttgagaggaaagaaaggaaaggttaag 42380972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 399
Target Start/End: Original strand, 6616772 - 6616803
Alignment:
Q  368 ctttgtttgcgagttttgaggggaaggaaagg 399  Q
    ||||||||||||||||||||||||||||||||    
T  6616772 ctttgtttgcgagttttgaggggaaggaaagg 6616803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 13569632 - 13569587
Alignment:
Q  358 aacagtaaggctttgtttgcgagttttgaggggaaggaaaggaaag 403  Q
    |||| ||||| |||||||| |||||| |||||||||||||||||||    
T  13569632 aacattaaggttttgtttgggagtttggaggggaaggaaaggaaag 13569587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 35683291 - 35683332
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||    
T  35683291 aggctttgtttgcgagtttggaggggaagaaaatgaaaggct 35683332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 29691872 - 29691920
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||| |||||||||||| | || ||||||||||| ||||    
T  29691872 taaggctttgtttgtgagttttgagggaaggggaaggaaaggcttagga 29691920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 13862 - 13814
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13862 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 13814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 28722911 - 28722863
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28722911 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 28722863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 28730553 - 28730505
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28730553 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 28730505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 30591773 - 30591821
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30591773 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 30591821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 34324332 - 34324286
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34324332 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 34324286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 26851688 - 26851640
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26851688 taaggctttgtttgcgagtttttaggggaaggaaaggaaaggctaagga 26851640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 367 - 411
Target Start/End: Original strand, 37805593 - 37805637
Alignment:
Q  367 gctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  37805593 gctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 37805637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 42578464 - 42578418
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  42578464 aggctttgtttgcgagttttgaggggaaggaaaggaaagactaagga 42578418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 363 - 404
Target Start/End: Original strand, 21258801 - 21258842
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaagg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  21258801 taaggctttgtttgcgagttttgaggggaaggaaaggaaagg 21258842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 406
Target Start/End: Complemental strand, 1840030 - 1839987
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  1840030 taaggctttgtttgcgagtttggaggggaaggaaaggaaaggct 1839987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 4857305 - 4857351
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||    
T  4857305 aggctttgtttacgagttttgaggggaaggaaaggaaagactaagga 4857351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 19384182 - 19384134
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||| ||||| || ||||||||||||||||||||||||||    
T  19384182 taaggctttgttttcgagtcttaaggggaaggaaaggaaaggctaagga 19384134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 406
Target Start/End: Original strand, 23932367 - 23932407
Alignment:
Q  366 ggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  23932367 ggctttgtttgggagttttgaggggaaggaaaggaaaggct 23932407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 28715568 - 28715520
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||| ||||| || ||||||||||||||||||||||||||    
T  28715568 taaggctttgttttcgagtcttaaggggaaggaaaggaaaggctaagga 28715520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 411
Target Start/End: Complemental strand, 23676105 - 23676063
Alignment:
Q  369 tttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  23676105 tttgtttgcgagttttgaggggaaggagaggaaagactaagga 23676063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 1839638 - 1839679
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    ||||||||||||||||||| |||||||||| |||||||||||    
T  1839638 aggctttgtttgcgagtttggaggggaagggaaggaaaggct 1839679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 406
Target Start/End: Complemental strand, 23932766 - 23932725
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    ||||||||||||||||||| |||||||||| |||| ||||||    
T  23932766 aggctttgtttgcgagtttggaggggaagggaagggaaggct 23932725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 37572122 - 37572074
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37572122 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 37572074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 2130117 - 2130163
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2130117 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 2130163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 20539883 - 20539837
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  20539883 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 20539837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 18946649 - 18946601
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18946649 taaggctttgtttgcgagttttgaggggaaggaaaggaaagactaagga 18946601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 20948932 - 20948884
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20948932 taaggctttgtttgcgagttttgagaggaaggaaaggaaaggctaagga 20948884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 26923432 - 26923480
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26923432 taaggttttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 26923480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 363 - 410
Target Start/End: Original strand, 34379246 - 34379293
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagg 410  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34379246 taaggctttgtttgcgagttttgaggggaaggaaatgaaaggctaagg 34379293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 27747612 - 27747658
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  27747612 aggctttgtttgcgagttttgagcggaaggaaaggaaaggctaagga 27747658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 48567520 - 48567474
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  48567520 aggctttgtttgcgagttttgaggagaaggaaaggaaaggctaagga 48567474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 11561741 - 11561789
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  11561741 taaggctctgtttgcgagttttgaagggaaggaaaggaaaggctaagga 11561789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 12088059 - 12088011
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||||||| ||||||| |||||| ||||||    
T  12088059 taaggctttgtttgcgagttttgagggaaaggaaatgaaaggttaagga 12088011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 411
Target Start/End: Original strand, 27085823 - 27085865
Alignment:
Q  369 tttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  27085823 tttgtttacgagttttgaggggaaggaaaagaaaggctaagga 27085865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 411
Target Start/End: Complemental strand, 27192478 - 27192436
Alignment:
Q  369 tttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  27192478 tttgtttacgagttttgaggggaaggaaaagaaaggctaagga 27192436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 406
Target Start/End: Complemental strand, 42254231 - 42254190
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  42254231 aggctttgtttgggagtttggaggggaaggaaaggaaaggct 42254190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 411
Target Start/End: Original strand, 40665481 - 40665524
Alignment:
Q  368 ctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||| ||| ||| |||||||||||||    
T  40665481 ctttgtttgcgagttttgagggaaagaaaaagaaaggctaagga 40665524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 406
Target Start/End: Original strand, 42253830 - 42253873
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    ||||||||||||||||| ||| |||||||||| |||||||||||    
T  42253830 taaggctttgtttgcgaatttggaggggaagggaaggaaaggct 42253873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 403
Target Start/End: Original strand, 32650209 - 32650247
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaag 403  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  32650209 aggctttgtttgcgagtttgaaggggaaggaaaggaaag 32650247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 412
Target Start/End: Complemental strand, 24139696 - 24139647
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaaggat 412  Q
    ||||||||||||||| ||||||||||||| || ||||||| ||| |||||    
T  24139696 taaggctttgtttgcaagttttgaggggaggggaaggaaatgcttaggat 24139647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 402
Target Start/End: Complemental strand, 38190007 - 38189971
Alignment:
Q  366 ggctttgtttgcgagttttgaggggaaggaaaggaaa 402  Q
    |||||||||||||||||||||||||| || |||||||    
T  38190007 ggctttgtttgcgagttttgaggggatgggaaggaaa 38189971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 16803066 - 16803018
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16803066 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 16803018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 4584336 - 4584290
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  4584336 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 4584290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 5401159 - 5401205
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  5401159 aggctttgtttgcgagttttgaggagaaggaaaggaaaggctaagga 5401205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 25361406 - 25361360
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  25361406 aggctttgtttgcgagttttgagggaaaggaaaggaaaggctaagga 25361360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 28301857 - 28301903
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  28301857 aggctttgtttgcgagttttcaggggaaggaaaggaaaggctaagga 28301903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 28510216 - 28510170
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  28510216 aggctttgtttgcgagttttcaggggaaggaaaggaaaggctaagga 28510170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 23303623 - 23303671
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  23303623 taaggctttgtttgtgagttttaaggggaaggaaaggaaaggctaagga 23303671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 30801744 - 30801697
Alignment:
Q  364 aaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||    
T  30801744 aaggctttgtttgcaagttttgaggggaaggaaaggaaatgctaagga 30801697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 404
Target Start/End: Complemental strand, 1390318 - 1390277
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaagg 404  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  1390318 taaggctttgtttgcgagttttgaggggaaggaaaagaaagg 1390277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 29732837 - 29732793
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaag 409  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||    
T  29732837 aggctttatttgcgagttttgaggggaaggaaaggaaagactaag 29732793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 406
Target Start/End: Original strand, 32719115 - 32719158
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    |||||||||||||| |||||| ||||||||||||||||||||||    
T  32719115 taaggctttgtttgggagtttagaggggaaggaaaggaaaggct 32719158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 26629619 - 26629664
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||  |||| |||||||||||||||||||||    
T  26629619 aggctttgtttgcgagtttaaaggg-aaggaaaggaaaggctaagga 26629664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 26735595 - 26735640
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||  |||| |||||||||||||||||||||    
T  26735595 aggctttgtttgcgagtttaaaggg-aaggaaaggaaaggctaagga 26735640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 8084994 - 8085042
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8084994 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 8085042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 44232991 - 44233039
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44232991 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 44233039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 56205255 - 56205303
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  56205255 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 56205303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 18689816 - 18689864
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18689816 taaggctttgtttgagagttttgaggggaaggaaaggaaaggctaagga 18689864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 19512551 - 19512503
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19512551 taaggctttgtttgcgaattttgaggggaaggaaaggaaaggctaagga 19512503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 28511494 - 28511542
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28511494 taaggctttgtttgcgagttttgaggggaaggaaatgaaaggctaagga 28511542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 40632338 - 40632290
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40632338 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggttaagga 40632290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 49050108 - 49050156
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  49050108 taagactttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 49050156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 1359509 - 1359461
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  1359509 taaggttttgtttgcgagttttgaggggaaggaaaagaaaggctaagga 1359461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 7880605 - 7880653
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||    
T  7880605 taaggctttgtttgcgagttttcaagggaaggaaaggaaaggctaagga 7880653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 12685880 - 12685928
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  12685880 taaggctttgtttgcgagttttgaggggaaggaaagaaaaggttaagga 12685928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 22457477 - 22457525
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  22457477 taaggctttgtttgcgagtttcgaggggaaggaaaggaaaggttaagga 22457525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 31991266 - 31991218
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  31991266 taaggctttgtttgcgagttttgagaggaaggaaaggaaaggttaagga 31991218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 36971117 - 36971069
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||    
T  36971117 taaggctttgtttgcgagttttgatgggaaggaaatgaaaggctaagga 36971069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 9392244 - 9392199
Alignment:
Q  358 aacagtaaggctttgtttgcgagttttgaggggaaggaaaggaaag 403  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||    
T  9392244 aacactaacgctttgtttgcgagttttgaggggaaggaaaggaaag 9392199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 404
Target Start/End: Complemental strand, 38024819 - 38024778
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaagg 404  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  38024819 taaggctttgtttgcgagttttgagaggaaggaaaggaaagg 38024778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 406
Target Start/End: Original strand, 29114059 - 29114102
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    |||||||||||||| |||||| ||||||||||||||||||||||    
T  29114059 taaggctttgtttgggagtttggaggggaaggaaaggaaaggct 29114102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 7312367 - 7312413
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||||||    
T  7312367 aggctttgtttgtgagttttgaggcgaaggaaaggaaatgctaagga 7312413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 409
Target Start/End: Complemental strand, 36089334 - 36089292
Alignment:
Q  367 gctttgtttgcgagttttgaggggaaggaaaggaaaggctaag 409  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  36089334 gctttgtttgtgagttttgaagggaaggaaaggaaaggctaag 36089292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 411
Target Start/End: Complemental strand, 45289060 - 45289018
Alignment:
Q  369 tttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||| ||||||||||||||||||||||||||||||| ||||    
T  45289060 tttgttcgcgagttttgaggggaaggaaaggaaaggctgagga 45289018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 50948047 - 50948002
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||    
T  50948047 aggctttgtttgcgagttttga-gggaaggaaaagaaaggctaagga 50948002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 406
Target Start/End: Complemental strand, 33500784 - 33500743
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  33500784 aggctttgtttgggagtttggaggggaaggaaaggaaaggct 33500743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 22450916 - 22450964
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||| ||||||||||||||||||||| || ||||| ||||||||||||    
T  22450916 taaggttttgtttgcgagttttgagggaaaagaaagaaaaggctaagga 22450964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 406
Target Start/End: Original strand, 38136650 - 38136693
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    |||||||||||||| |||||| |||||||||| |||||||||||    
T  38136650 taaggctttgtttgggagtttggaggggaagggaaggaaaggct 38136693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 41548779 - 41548740
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaagg 404  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  41548779 aggctttgtttgcgagttttgaggggaggggaaggaaagg 41548740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 21357549 - 21357595
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||| ||| || ||||||||||| ||||    
T  21357549 aggctttgtttgcgagttttgagaggaggggaaggaaaggcttagga 21357595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 401
Target Start/End: Complemental strand, 23919428 - 23919394
Alignment:
Q  367 gctttgtttgcgagttttgaggggaaggaaaggaa 401  Q
    ||||||||||||||||||||||| |||||||||||    
T  23919428 gctttgtttgcgagttttgagggaaaggaaaggaa 23919394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 30198588 - 30198630
Alignment:
Q  364 aaggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    ||||||||||||| |||||| ||| ||||||||||||||||||    
T  30198588 aaggctttgtttgggagtttggagaggaaggaaaggaaaggct 30198630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 406
Target Start/End: Complemental strand, 16318881 - 16318840
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    |||||||||||| |||||| ||| ||||||||||||||||||    
T  16318881 aggctttgtttgtgagtttggagaggaaggaaaggaaaggct 16318840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 406
Target Start/End: Complemental strand, 48620543 - 48620502
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    ||||||||||||||||||| ||||||| || |||||||||||    
T  48620543 aggctttgtttgcgagtttggaggggaggggaaggaaaggct 48620502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 411
Target Start/End: Original strand, 16318491 - 16318535
Alignment:
Q  367 gctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||| | || |||||| ||||    
T  16318491 gctttgtttgcgagttttgaggggaagggaggggaaggcttagga 16318535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 409
Target Start/End: Original strand, 52323603 - 52323639
Alignment:
Q  373 tttgcgagttttgaggggaaggaaaggaaaggctaag 409  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  52323603 tttgcgagttttgaggggaagaaaatgaaaggctaag 52323639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 4604051 - 4604099
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4604051 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 4604099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 13279157 - 13279109
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13279157 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 13279109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 31165081 - 31165127
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31165081 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 31165127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 33149194 - 33149243
Alignment:
Q  361 agtaaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagg 410  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33149194 agtaaggctttgtttgcgagttttgaggagaaggaaaggaaaggctaagg 33149243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 5630634 - 5630586
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5630634 taaggctttgcttgcgagttttgaggggaaggaaaggaaaggctaagga 5630586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 8410731 - 8410685
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  8410731 aggctttgtttgcgagttttaaggggaaggaaaggaaaggctaagga 8410685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 48868908 - 48868954
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  48868908 aggctttgtttgcgagttttaaggggaaggaaaggaaaggctaagga 48868954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 55349604 - 55349558
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  55349604 aggctttgtttgcgagttttgaggggaaggaaaggaaagcctaagga 55349558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 13279412 - 13279460
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  13279412 taaggctttgtttgcaagttttgaggggaaggaaaggaaaggttaagga 13279460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 16867306 - 16867258
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  16867306 taaggctttgtttgcgagatttgaggggaaggaaaggaaaggttaagga 16867258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 29451537 - 29451583
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||    
T  29451537 aggctttgtttgtgagttttgaggggaaggaaaggaaatgctaagga 29451583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 41717997 - 41718043
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||    
T  41717997 aggctttgtttgcgagttttgaggggaaagaaagggaaggctaagga 41718043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 53253818 - 53253772
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||    
T  53253818 aggctttgtttgcgagttttgaggggaaagaaaggaaagggtaagga 53253772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 411
Target Start/End: Original strand, 52786205 - 52786252
Alignment:
Q  364 aaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  52786205 aaggctttgtttgcgagttttgaagggaagaaaaagaaaggctaagga 52786252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 411
Target Start/End: Original strand, 52792469 - 52792516
Alignment:
Q  364 aaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  52792469 aaggctttgtttgcgagttttgaagggaagaaaaagaaaggctaagga 52792516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 403
Target Start/End: Original strand, 53664426 - 53664464
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaag 403  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  53664426 aggctttgtttgcgagtttggaggggaaggaaaggaaag 53664464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 5939599 - 5939640
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  5939599 aggctttgtttgggagtttggaggggaaggaaaggaaaggct 5939640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 19010342 - 19010391
Alignment:
Q  363 taaggctttgtttgcgagtttt-gaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||||||||    
T  19010342 taaggctttgtgtgcgagtttttgaggggatggaaaggaaaggctaagga 19010391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 406
Target Start/End: Complemental strand, 44400962 - 44400921
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  44400962 aggctttgtttgggagtttggaggggaaggaaaggaaaggct 44400921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 48908710 - 48908751
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  48908710 aggctttgtttgggagtttggaggggaaggaaaggaaaggct 48908751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 406
Target Start/End: Original strand, 37673969 - 37674012
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    ||||||||| |||| |||||| ||||||||||||||||||||||    
T  37673969 taaggctttctttgggagtttggaggggaaggaaaggaaaggct 37674012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 411
Target Start/End: Complemental strand, 7050462 - 7050428
Alignment:
Q  377 cgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||| |||||||||||||    
T  7050462 cgagttttgaggggaaggaaatgaaaggctaagga 7050428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 406
Target Start/End: Complemental strand, 517838 - 517797
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    ||||||||||||||||||| |||||||||| | |||||||||    
T  517838 aggctttgtttgcgagtttggaggggaagggagggaaaggct 517797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 33944458 - 33944499
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    |||||||||||| |||||| ||||| ||||||||||||||||    
T  33944458 aggctttgtttgggagtttggagggaaaggaaaggaaaggct 33944499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 396
Target Start/End: Original strand, 35282960 - 35282992
Alignment:
Q  364 aaggctttgtttgcgagttttgaggggaaggaa 396  Q
    |||||||||||||||||||| ||||||||||||    
T  35282960 aaggctttgtttgcgagtttggaggggaaggaa 35282992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 394
Target Start/End: Original strand, 38639468 - 38639500
Alignment:
Q  362 gtaaggctttgtttgcgagttttgaggggaagg 394  Q
    |||||||||||||||||||||| ||||||||||    
T  38639468 gtaaggctttgtttgcgagtttggaggggaagg 38639500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 2981502 - 2981454
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2981502 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 2981454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 31369085 - 31369037
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31369085 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 31369037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 32062336 - 32062290
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32062336 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 32062290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 22333950 - 22333998
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22333950 taaggctttgtttgcgagtttttaggggaaggaaaggaaaggctaagga 22333998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 20285891 - 20285845
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  20285891 aggctttgtttgcgaattttgaggggaaggaaaggaaaggctaagga 20285845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 20291175 - 20291129
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  20291175 aggctttgtttgcgaattttgaggggaaggaaaggaaaggctaagga 20291129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 19383141 - 19383181
Alignment:
Q  371 tgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19383141 tgtttgcgagttttgaggggaaggaaaggaaaggctaagga 19383181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 35558794 - 35558842
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  35558794 taaggctctgtttgcgagttttgaggggagggaaaggaaaggctaagga 35558842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 36556140 - 36556094
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||    
T  36556140 aggctttgtttgcgagttttaaggggaaagaaaggaaaggctaagga 36556094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 406
Target Start/End: Complemental strand, 1365086 - 1365045
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  1365086 aggctttgtttgcgagtttggaggggaaggaaaggaaaggct 1365045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 404
Target Start/End: Complemental strand, 11515309 - 11515268
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaagg 404  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  11515309 taaggctttgtttgcgagtttggaggggaaggaaaggaaagg 11515268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 35541455 - 35541500
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaa 408  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||    
T  35541455 taaggctctgtttgcgagttttgaggggagggaaaggaaaggctaa 35541500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 37916586 - 37916634
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||| ||||||||||||||||||||||||| |||| |||||||||||||    
T  37916586 taagactttgtttgcgagttttgaggggaaagaaatgaaaggctaagga 37916634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 408
Target Start/End: Original strand, 30725743 - 30725786
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaa 408  Q
    |||||||||||| |||||||||||||||||||| ||||||||||    
T  30725743 aggctttgtttgtgagttttgaggggaaggaaatgaaaggctaa 30725786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 13018296 - 13018337
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  13018296 aggctttgtttgggagtttggaggggaaggaaaggaaaggct 13018337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 43572362 - 43572403
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  43572362 aggctttgtttgggagtttggaggggaaggaaaggaaaggct 43572403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 11914202 - 11914154
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||| |||||||||||||||||||||||| || ||||||||||| ||||    
T  11914202 taagactttgtttgcgagttttgaggggaggggaaggaaaggcttagga 11914154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 411
Target Start/End: Original strand, 1855207 - 1855245
Alignment:
Q  373 tttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  1855207 tttgcgagttttgaagggaaggaaatgaaaggctaagga 1855245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 402
Target Start/End: Original strand, 36870128 - 36870172
Alignment:
Q  358 aacagtaaggctttgtttgcgagttttgaggggaaggaaaggaaa 402  Q
    |||| |||||||||||||||||||||  ||||||||| |||||||    
T  36870128 aacactaaggctttgtttgcgagtttgaaggggaagggaaggaaa 36870172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 48187567 - 48187519
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48187567 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 48187519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 27273223 - 27273269
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27273223 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 27273269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 28727518 - 28727564
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  28727518 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 28727564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 9198106 - 9198058
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9198106 taaggctttgtttgtgagttttgaggggaaggaaaggaaaggctaagga 9198058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 17169942 - 17169988
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  17169942 aggctttgtttgcgagttttgaggggaaggaaaggataggctaagga 17169988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 14754993 - 14754945
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  14754993 taaggctttgtttgcgagttttgagggaaaggaaaggaaagactaagga 14754945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 404
Target Start/End: Complemental strand, 5584775 - 5584734
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaagg 404  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  5584775 taaggctttgtttgcgagtttggaggggaaggaaaggaaagg 5584734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 404
Target Start/End: Original strand, 7877449 - 7877490
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaagg 404  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  7877449 taaggctttgtttgcgagttttgaagggaaggaaaggaaagg 7877490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 411
Target Start/End: Complemental strand, 13425902 - 13425857
Alignment:
Q  366 ggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||    
T  13425902 ggctttgtttgcgagttttgaggggaaagaaaggaaagactaagga 13425857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 411
Target Start/End: Complemental strand, 48189712 - 48189667
Alignment:
Q  366 ggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||    
T  48189712 ggctttgtttgtgagttttgaggggaaggaaaggaaagtctaagga 48189667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 403
Target Start/End: Original strand, 49534515 - 49534555
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaag 403  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  49534515 taaggctttgtttgcgagttttgaggggaaggaaatgaaag 49534555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 406
Target Start/End: Complemental strand, 2909382 - 2909339
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    |||||||||||||| |||||| ||||||||||||||||||||||    
T  2909382 taaggctttgtttgggagtttggaggggaaggaaaggaaaggct 2909339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 18421114 - 18421075
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaagg 404  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  18421114 aggctttgtttgcgagttttgaggggaagaaaaggaaagg 18421075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 37649434 - 37649475
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  37649434 aggctttgtttgggagtttggaggggaaggaaaggaaaggct 37649475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 406
Target Start/End: Complemental strand, 40136478 - 40136437
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    ||||||||||||||||||| ||||||||||||||| ||||||    
T  40136478 aggctttgtttgcgagtttggaggggaaggaaagggaaggct 40136437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 403
Target Start/End: Original strand, 34154154 - 34154194
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaag 403  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  34154154 taaggctttgtttgggagtttggaggggaaggaaaggaaag 34154194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 44774020 - 44773972
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||||||||| || ||||||| ||| ||||    
T  44774020 taaggctttgtttgcgagttttgaggggatgggaaggaaaagcttagga 44773972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 404
Target Start/End: Original strand, 44699791 - 44699829
Alignment:
Q  366 ggctttgtttgcgagttttgaggggaaggaaaggaaagg 404  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  44699791 ggctttgtttgcgagttttgaggggaagggaagggaagg 44699829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 404
Target Start/End: Complemental strand, 7186885 - 7186844
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaagg 404  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  7186885 taaggctttgtttgcgagttttgagggaaggggaaggaaagg 7186844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 394
Target Start/End: Complemental strand, 52073661 - 52073628
Alignment:
Q  361 agtaaggctttgtttgcgagttttgaggggaagg 394  Q
    ||||||||||||||||||||||| ||||||||||    
T  52073661 agtaaggctttgtttgcgagtttggaggggaagg 52073628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 38795540 - 38795504
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaagg 399  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  38795540 taaggctttgtttgcgagtttagaggagaaggaaagg 38795504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 41432982 - 41432946
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaagg 399  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  41432982 taaggctttgtttgcgagtttggaggggaagggaagg 41432946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 47742406 - 47742442
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaagg 399  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  47742406 taaggctttgtttgcgagtttggaggggaagaaaagg 47742442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 9967 - 9919
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9967 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggttaagga 9919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 4094 - 4046
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4094 taaggctttgtttgcgagttttgaggggaaggaaaagaaaggctaagga 4046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 44376 - 44424
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44376 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggttaagga 44424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 403
Target Start/End: Original strand, 72411 - 72448
Alignment:
Q  366 ggctttgtttgcgagttttgaggggaaggaaaggaaag 403  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  72411 ggctttgtttgcgagttttgaggggaatgaaaggaaag 72448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 46558 - 46604
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  46558 aggctttgtttgcgagttttgaggggaaggaaaggaaagactaagga 46604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 152229 - 152183
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  152229 aggctttgtttgcgagttttgaggggaaggaaaggaaagactaagga 152183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 4979 - 4931
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  4979 taaggctttgtttgcgagttttgagcggaaggaaaggaaagactaagga 4931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 23101 - 23145
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaaggctaag 409  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||    
T  23101 aggctttattttcgagttttgaggggaaggaaaggaaaggctaag 23145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 14452 - 14405
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  14452 taaggctttgtt-gcgagttttgaggggaaagaaaggaaaggctaagga 14405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 406
Target Start/End: Complemental strand, 26645 - 26603
Alignment:
Q  364 aaggctttgtttgcgagttttgaggggaaggaaaggaaaggct 406  Q
    ||||||||||||| |||||| ||||||||||||||||||||||    
T  26645 aaggctttgtttgggagtttggaggggaaggaaaggaaaggct 26603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 93313 - 93350
Alignment:
Q  365 aggctttgtttgcgagttttgaggggaaggaaaggaaa 402  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  93313 aggctttgtttgggagtttggaggggaaggaaaggaaa 93350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 4467 - 4419
Alignment:
Q  363 taaggctttgtttgcgagttttgaggggaaggaaaggaaaggctaagga 411  Q
    ||||||||||||||||| |||| |||||| || ||||||||||| ||||    
T  4467 taaggctttgtttgcgaatttttaggggaggggaaggaaaggcttagga 4419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University