View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_40 (Length: 288)
Name: NF1394_low_40
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 161 - 267
Target Start/End: Original strand, 36596142 - 36596248
Alignment:
| Q |
161 |
aggcgcattctaacataagcagcaactgaaacatatcggaaaatgtgcgtgagagaaaatacgacaaagacatcttacaaatctcttctgtcaatttatc |
260 |
Q |
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| T |
36596142 |
aggcgcattctaacataagcagcaactgaaacatatcggaaaatgtgcgtgagagaaaatacgacaaacgcatcttacaattctcttctgtcaatttatc |
36596241 |
T |
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| Q |
261 |
aaatttc |
267 |
Q |
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||||||| |
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| T |
36596242 |
aaatttc |
36596248 |
T |
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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 36596016 - 36596075
Alignment:
| Q |
31 |
taacaacctaaggtgattcggaggatccaacggttttacagagatgtagagagtcatgacata |
93 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36596016 |
taacaacctaaggtgattcgga---tccaacggttttacagagatgtagagagtcatgacata |
36596075 |
T |
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