View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_41 (Length: 284)
Name: NF1394_low_41
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 11022988 - 11023228
Alignment:
| Q |
29 |
atcaaccccttttataaacacttctaagttgtaacagatttagaacatagagcactagcacctagaagaagaaaaaggagaggtagaagagtcacataaa |
128 |
Q |
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| T |
11022988 |
atcaaccccttttataaacacttctaagttgtaacagatttagaacacagagcactaa-accaagaagaagaaaaaagagaagtagaagaatcacataag |
11023086 |
T |
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| Q |
129 |
ctaaaa-aatgggaacagaatccaaaccattgaaaatctacatgctcccattttttgcacaaggacacttaatccctctggtaaacttagctcgtttagt |
227 |
Q |
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| T |
11023087 |
ctaaaaaaatgggaacagaatccaaaccattgaaaatctacatgctcccattttttgcacaaggacacttaatccctcttgtaaacttagctcgattagt |
11023186 |
T |
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| Q |
228 |
agcatcaaaaaaccaacatgtaactatcataacaacaccttc |
269 |
Q |
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| T |
11023187 |
agcatccaaaaaccaacatgtaaccatcataacaacaccttc |
11023228 |
T |
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