View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_48 (Length: 251)
Name: NF1394_low_48
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 5590216 - 5590359
Alignment:
| Q |
18 |
ggaagaataacacaattttttctcaaactttcacttttacccttgttttatcatgagtcctcacacttctcannnnnnncttaacgnnnnnnnn-catct |
116 |
Q |
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| T |
5590216 |
ggaagaataacacacttttt-ctcaaacttccacttttaccctcgttttatcatgagtcctcacacttcgcattttt---ttaacgtttttttttcatct |
5590311 |
T |
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| Q |
117 |
taatattacaatgtattttgcatttaagaaaataaatgggttagtaac |
164 |
Q |
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| T |
5590312 |
taatattacaatgtattttgcatttaagaaaataaatgggttagtaac |
5590359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 38947320 - 38947175
Alignment:
| Q |
8 |
cgaagaatatggaagaataacacaattttttctcaaactttcacttttacccttgttttatcatgagtcctcacacttctcannnnnnncttaacgnnnn |
107 |
Q |
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| T |
38947320 |
cgaagaaagtggaagaataacacacttttttctcaaactttcacttttaccctcgttttatcacgagtcctcactttt-----------tgtaacgtttt |
38947232 |
T |
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| Q |
108 |
nnnncatcttaatattacaatgtattttgcatttaagaaaataaatgggttagtaac |
164 |
Q |
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| T |
38947231 |
ttttcatcttaatattacaatgtattttgcatttaagaaaataaatgggttagtaac |
38947175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 38947111 - 38947054
Alignment:
| Q |
190 |
gataaaaataaatttgattgttcnnnnnnnatttaagggtattcttgtactttcaaaa |
247 |
Q |
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| T |
38947111 |
gataaaaataaatttgactgttctttttttatttaagggtattcttgtacttttaaaa |
38947054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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