View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1394_low_5 (Length: 451)

Name: NF1394_low_5
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1394_low_5
NF1394_low_5
[»] chr4 (5 HSPs)
chr4 (30-451)||(1759382-1759803)
chr4 (127-451)||(1759617-1759941)
chr4 (113-451)||(1759672-1760010)
chr4 (127-420)||(1759755-1760048)
chr4 (113-327)||(1759810-1760024)


Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 30 - 451
Target Start/End: Original strand, 1759382 - 1759803
Alignment:
Q  30 acaggatcaggattaggaacagggtcttgtgggatacctggaaactcaggaaccaccggtgacgcgataaaagcatcaggtgctggcatggcaaaaattg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1759382 acaggatcaggattaggaacagggtcttgtgggatacctggaaactcaggaaccaccggtgacgcgataaaagcatcaggtgctggcatggcaaaaattg 1759481  T
Q  130 gtggttcttgtggaatctcaggaggagaaagaaaaatatctggtgttggatttggcatggcgaaaattggtggttcctgtggaatctcaggaggagaaag 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1759482 gtggttcttgtggaatctcaggaggagaaagaaaaatatctggtgttggatttggcatggcgaaaattggtggttcctgtggaatctcaggaggagaaag 1759581  T
Q  230 aaaaatatctggtgttgggtttggcatggagaaagttggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcgtggca 329  Q
    ||||||||| |||||||| |||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1759582 aaaaatatcaggtgttggatttggcgtggcgatagttggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcgtggca 1759681  T
Q  330 aaaatcggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcatggagaaagatggtggttcttgtggaatctctggtg 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  1759682 aaaatcggtggttcttgtggaatctctggtggagaaagaaaaatatctggggttgggtttggcatgtagaaagttggtggttcttgtggaatctctggtg 1759781  T
Q  430 gagaaagaaaaatatctggtgt 451  Q
    ||||||||||||||||||||||    
T  1759782 gagaaagaaaaatatctggtgt 1759803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 127 - 451
Target Start/End: Original strand, 1759617 - 1759941
Alignment:
Q  127 ttggtggttcttgtggaatctcaggaggagaaagaaaaatatctggtgttggatttggcatggcgaaaattggtggttcctgtggaatctcaggaggaga 226  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||| |||||| |||| ||||| |||||||| ||||||||||| || |||||    
T  1759617 ttggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcgtggcaaaaatcggtggttcttgtggaatctctggtggaga 1759716  T
Q  227 aagaaaaatatctggtgttgggtttggcatggagaaagttggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcgtg 326  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1759717 aagaaaaatatctggggttgggtttggcatgtagaaagttggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcatg 1759816  T
Q  327 gcaaaaatcggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcatggagaaagatggtggttcttgtggaatctctg 426  Q
    |  ||| | ||||||||||||||||||||||| |||| |||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1759817 gagaaagttggtggttcttgtggaatctctggaggaggaagagaactatcaggtgttgggtttggcatggagaaagatggtggttcttgtggaatctctg 1759916  T
Q  427 gtggagaaagaaaaatatctggtgt 451  Q
    | |||| |||| || ||| ||||||    
T  1759917 gaggaggaagagaattatatggtgt 1759941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 113 - 451
Target Start/End: Original strand, 1759672 - 1760010
Alignment:
Q  113 tggcatggcaaaaattggtggttcttgtggaatctcaggaggagaaagaaaaatatctggtgttggatttggcatggcgaaaattggtggttcctgtgga 212  Q
    |||| |||||||||| |||||||||||||||||||| || |||||||||||||||||||| ||||| |||||||||  |||| |||||||||| ||||||    
T  1759672 tggcgtggcaaaaatcggtggttcttgtggaatctctggtggagaaagaaaaatatctggggttgggtttggcatgtagaaagttggtggttcttgtgga 1759771  T
Q  213 atctcaggaggagaaagaaaaatatctggtgttgggtttggcatggagaaagttggtggttcttgtggaatctctggtggagaaagaaaaatatctggtg 312  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| || |||| ||||    
T  1759772 atctctggtggagaaagaaaaatatctggtgttgggtttggcatggagaaagttggtggttcttgtggaatctctggaggaggaagagaactatcaggtg 1759871  T
Q  313 ttgggtttggcgtggcaaaaatcggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcatggagaaagatggtggttc 412  Q
    ||||||||||| |||  |||   ||||||||||||||||||||||| |||| |||| || ||| ||||||||||||||||||||||||||||||||||||    
T  1759872 ttgggtttggcatggagaaagatggtggttcttgtggaatctctggaggaggaagagaattatatggtgttgggtttggcatggagaaagatggtggttc 1759971  T
Q  413 ttgtggaatctctggtggagaaagaaaaatatctggtgt 451  Q
    || |||||||||||| |||||| |  || ||||||||||    
T  1759972 ttttggaatctctggaggagaaggcgaattatctggtgt 1760010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 127 - 420
Target Start/End: Original strand, 1759755 - 1760048
Alignment:
Q  127 ttggtggttcttgtggaatctcaggaggagaaagaaaaatatctggtgttggatttggcatggcgaaaattggtggttcctgtggaatctcaggaggaga 226  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||| |||| |||||||||| ||||||||||| |||||||     
T  1759755 ttggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcatggagaaagttggtggttcttgtggaatctctggaggagg 1759854  T
Q  227 aagaaaaatatctggtgttgggtttggcatggagaaagttggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcgtg 326  Q
    |||| || |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| || ||| |||||||||||||||| ||    
T  1759855 aagagaactatcaggtgttgggtttggcatggagaaagatggtggttcttgtggaatctctggaggaggaagagaattatatggtgttgggtttggcatg 1759954  T
Q  327 gcaaaaatcggtggttcttgtggaatctctggtggagaaagaaaaatatctggtgttgggtttggcatggagaaagatggtggttcttgtggaa 420  Q
    |  |||   |||||||||| |||||||||||| |||||| |  || ||||||||||||| |||||| ||| ||||||||| |||| ||||||||    
T  1759955 gagaaagatggtggttcttttggaatctctggaggagaaggcgaattatctggtgttggatttggcgtggtgaaagatgggggttgttgtggaa 1760048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 113 - 327
Target Start/End: Original strand, 1759810 - 1760024
Alignment:
Q  113 tggcatggcaaaaattggtggttcttgtggaatctcaggaggagaaagaaaaatatctggtgttggatttggcatggcgaaaattggtggttcctgtgga 212  Q
    ||||||||  ||| |||||||||||||||||||||| ||||||| |||| || |||| |||||||| |||||||||| ||||  ||||||||| ||||||    
T  1759810 tggcatggagaaagttggtggttcttgtggaatctctggaggaggaagagaactatcaggtgttgggtttggcatggagaaagatggtggttcttgtgga 1759909  T
Q  213 atctcaggaggagaaagaaaaatatctggtgttgggtttggcatggagaaagttggtggttcttgtggaatctctggtggagaaagaaaaatatctggtg 312  Q
    ||||| ||||||| |||| || ||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||| |  || |||||||||    
T  1759910 atctctggaggaggaagagaattatatggtgttgggtttggcatggagaaagatggtggttcttttggaatctctggaggagaaggcgaattatctggtg 1760009  T
Q  313 ttgggtttggcgtgg 327  Q
    |||| ||||||||||    
T  1760010 ttggatttggcgtgg 1760024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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