View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1394_low_50 (Length: 251)

Name: NF1394_low_50
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1394_low_50
NF1394_low_50
[»] chr8 (5 HSPs)
chr8 (13-83)||(35699849-35699919)
chr8 (211-244)||(19429994-19430027)
chr8 (211-244)||(19435496-19435529)
chr8 (211-244)||(19566143-19566176)
chr8 (211-244)||(19571645-19571678)
[»] chr1 (5 HSPs)
chr1 (179-247)||(5602504-5602572)
chr1 (175-244)||(39747247-39747317)
chr1 (180-247)||(19422957-19423025)
chr1 (211-251)||(26651241-26651281)
chr1 (211-244)||(38734255-38734288)
[»] chr2 (1 HSPs)
chr2 (179-244)||(42914590-42914655)
[»] chr3 (3 HSPs)
chr3 (193-247)||(26962021-26962075)
chr3 (193-244)||(33089425-33089476)
chr3 (211-240)||(53119507-53119536)
[»] chr7 (3 HSPs)
chr7 (196-244)||(9973427-9973475)
chr7 (211-244)||(24528334-24528367)
chr7 (211-244)||(28292584-28292617)
[»] chr6 (9 HSPs)
chr6 (180-240)||(31476101-31476161)
chr6 (177-240)||(31495927-31495990)
chr6 (177-240)||(31501313-31501376)
chr6 (180-244)||(19478097-19478161)
chr6 (177-240)||(31515817-31515880)
chr6 (180-241)||(13605177-13605239)
chr6 (193-241)||(17290148-17290196)
chr6 (213-244)||(3901894-3901925)
chr6 (193-240)||(29325496-29325544)
[»] scaffold0132 (2 HSPs)
scaffold0132 (193-244)||(2854-2905)
scaffold0132 (193-244)||(10814-10865)


Alignment Details
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 35699849 - 35699919
Alignment:
Q  13 cagaccccaatgactattgcaacaaccatataaatacatgatttcactataaagtaaggtacacaatcttt 83  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35699849 cagaccccaatgactattgccacaaccatataaatacatgatttcactataaagtaaggtacacaatcttt 35699919  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 19429994 - 19430027
Alignment:
Q  211 tgccaaaggaattaccgggttgagtcacgaccag 244  Q
    ||||||||||||||||||||||||||||||||||    
T  19429994 tgccaaaggaattaccgggttgagtcacgaccag 19430027  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 19435496 - 19435529
Alignment:
Q  211 tgccaaaggaattaccgggttgagtcacgaccag 244  Q
    ||||||||||||||||||||||||||||||||||    
T  19435496 tgccaaaggaattaccgggttgagtcacgaccag 19435529  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 19566143 - 19566176
Alignment:
Q  211 tgccaaaggaattaccgggttgagtcacgaccag 244  Q
    ||||||||||||||||||||||||||||||||||    
T  19566143 tgccaaaggaattaccgggttgagtcacgaccag 19566176  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 19571645 - 19571678
Alignment:
Q  211 tgccaaaggaattaccgggttgagtcacgaccag 244  Q
    ||||||||||||||||||||||||||||||||||    
T  19571645 tgccaaaggaattaccgggttgagtcacgaccag 19571678  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 5602572 - 5602504
Alignment:
Q  179 ctgttagttttgtgtttaaaaatcagaactattgccaaaggaattaccgggttgagtcacgaccagatc 247  Q
    ||||||||||||  |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  5602572 ctgttagttttgaatttaaaaatcagaagtactgccaaaggaattaccgggttgagtcacgaccagatc 5602504  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 39747317 - 39747247
Alignment:
Q  175 tgttctgttagttttgtgtttaaaaa-tcagaactattgccaaaggaattaccgggttgagtcacgaccag 244  Q
    |||| |||||||||||  |||||||| |||||| || |||||||||||||| |||||||||||||||||||    
T  39747317 tgttgtgttagttttgaatttaaaaaatcagaagtagtgccaaaggaattatcgggttgagtcacgaccag 39747247  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 19423025 - 19422957
Alignment:
Q  180 tgttagttttgtgtttaaaaa-tcagaactattgccaaaggaattaccgggttgagtcacgaccagatc 247  Q
    |||||||||||  |||||||| |||||| || || |||||||||||| |||||||||||||| ||||||    
T  19423025 tgttagttttgaatttaaaaaatcagaagtactggcaaaggaattactgggttgagtcacgatcagatc 19422957  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 26651281 - 26651241
Alignment:
Q  211 tgccaaaggaattaccgggttgagtcacgaccagatcactc 251  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  26651281 tgccaaaggaattatcgggttgagtcacgaccaggtcactc 26651241  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 38734255 - 38734288
Alignment:
Q  211 tgccaaaggaattaccgggttgagtcacgaccag 244  Q
    |||||||||||||| |||||||||||||||||||    
T  38734255 tgccaaaggaattatcgggttgagtcacgaccag 38734288  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 42914590 - 42914655
Alignment:
Q  179 ctgttagttttgtgtttaaaaatcagaactattgccaaaggaattaccgggttgagtcacgaccag 244  Q
    ||||||||||||  |||||||||||||| || |||||||||||||| |||||||||||||||||||    
T  42914590 ctgttagttttgaatttaaaaatcagaagtactgccaaaggaattagcgggttgagtcacgaccag 42914655  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 26962021 - 26962075
Alignment:
Q  193 tttaaaaatcagaactattgccaaaggaattaccgggttgagtcacgaccagatc 247  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||||||||||||    
T  26962021 tttaaaaatcagaactactaccaaaggaattactgggttgagtcacgaccagatc 26962075  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 33089476 - 33089425
Alignment:
Q  193 tttaaaaatcagaactattgccaaaggaattaccgggttgagtcacgaccag 244  Q
    |||| |||||| || || ||||||||||||||||||||||||||||||||||    
T  33089476 tttagaaatcaaaaatactgccaaaggaattaccgggttgagtcacgaccag 33089425  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 240
Target Start/End: Original strand, 53119507 - 53119536
Alignment:
Q  211 tgccaaaggaattaccgggttgagtcacga 240  Q
    ||||||||||||||||||||||||||||||    
T  53119507 tgccaaaggaattaccgggttgagtcacga 53119536  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 9973427 - 9973475
Alignment:
Q  196 aaaaatcagaactattgccaaaggaattaccgggttgagtcacgaccag 244  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  9973427 aaaaatcagaagtattgtcaaaggaattaccgggttgagtcacgaccag 9973475  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 24528334 - 24528367
Alignment:
Q  211 tgccaaaggaattaccgggttgagtcacgaccag 244  Q
    |||||||||||||| |||||||||||||||||||    
T  24528334 tgccaaaggaattatcgggttgagtcacgaccag 24528367  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 28292617 - 28292584
Alignment:
Q  211 tgccaaaggaattaccgggttgagtcacgaccag 244  Q
    ||||||||||||||||||||| ||||||||||||    
T  28292617 tgccaaaggaattaccgggttaagtcacgaccag 28292584  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 31476161 - 31476101
Alignment:
Q  180 tgttagttttgtgtttaaaaatcagaactattgccaaaggaattaccgggttgagtcacga 240  Q
    ||||| |||||||||||||||||||||| | ||| |||||||||| |||||||||||||||    
T  31476161 tgttatttttgtgtttaaaaatcagaaccactgctaaaggaattatcgggttgagtcacga 31476101  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 31495990 - 31495927
Alignment:
Q  177 ttctgttagttttgtgtttaaaaatcagaactattgccaaaggaattaccgggttgagtcacga 240  Q
    |||||||| |||||||||||||||||||||| | | | |||||||||| |||||||||||||||    
T  31495990 ttctgttatttttgtgtttaaaaatcagaaccactactaaaggaattatcgggttgagtcacga 31495927  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 31501376 - 31501313
Alignment:
Q  177 ttctgttagttttgtgtttaaaaatcagaactattgccaaaggaattaccgggttgagtcacga 240  Q
    |||||||| |||||||||||||||||||||| | | | |||||||||| |||||||||||||||    
T  31501376 ttctgttatttttgtgtttaaaaatcagaaccactactaaaggaattatcgggttgagtcacga 31501313  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 19478097 - 19478161
Alignment:
Q  180 tgttagttttgtgtttaaaaatcagaactattgccaaaggaattaccgggttgagtcacgaccag 244  Q
    |||||||||||  |||| |||| |||| || || |||||||||||||||||||||||||||||||    
T  19478097 tgttagttttgaatttagaaattagaaatactgtcaaaggaattaccgggttgagtcacgaccag 19478161  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 31515880 - 31515817
Alignment:
Q  177 ttctgttagttttgtgtttaaaaatcagaactattgccaaaggaattaccgggttgagtcacga 240  Q
    |||||||| |||||||||||||||||||||| | | | |||||||||| | |||||||||||||    
T  31515880 ttctgttatttttgtgtttaaaaatcagaaccactactaaaggaattatcaggttgagtcacga 31515817  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 13605239 - 13605177
Alignment:
Q  180 tgttagttttgtgtttaaaaa-tcagaactattgccaaaggaattaccgggttgagtcacgac 241  Q
    |||||||||||  |||||||| |||||| || || ||||||||||||||||||||||||||||    
T  13605239 tgttagttttgaatttaaaaaatcagaagtactgtcaaaggaattaccgggttgagtcacgac 13605177  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 17290196 - 17290148
Alignment:
Q  193 tttaaaaatcagaactattgccaaaggaattaccgggttgagtcacgac 241  Q
    |||||||||| |||||| | ||||||||||||||||||| |||||||||    
T  17290196 tttaaaaatcggaactactaccaaaggaattaccgggttaagtcacgac 17290148  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 244
Target Start/End: Original strand, 3901894 - 3901925
Alignment:
Q  213 ccaaaggaattaccgggttgagtcacgaccag 244  Q
    ||||||||||||||||||||||||||||||||    
T  3901894 ccaaaggaattaccgggttgagtcacgaccag 3901925  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 29325496 - 29325544
Alignment:
Q  193 tttaaaaatcagaa-ctattgccaaaggaattaccgggttgagtcacga 240  Q
    |||||||||||||| ||| | |||||| |||||||||||||||||||||    
T  29325496 tttaaaaatcagaaactactaccaaagtaattaccgggttgagtcacga 29325544  T

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Target: scaffold0132 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 2905 - 2854
Alignment:
Q  193 tttaaaaatcagaactattgccaaaggaattaccgggttgagtcacgaccag 244  Q
    |||| ||||||||| || ||| ||||||||||||||||||||||||||||||    
T  2905 tttagaaatcagaaatactgcaaaaggaattaccgggttgagtcacgaccag 2854  T

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Target: scaffold0132; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 10865 - 10814
Alignment:
Q  193 tttaaaaatcagaactattgccaaaggaattaccgggttgagtcacgaccag 244  Q
    |||| ||||||||| || ||| ||||||||||||||||||||||||||||||    
T  10865 tttagaaatcagaaatactgcaaaaggaattaccgggttgagtcacgaccag 10814  T

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