View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_53 (Length: 251)
Name: NF1394_low_53
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 35 - 223
Target Start/End: Original strand, 9359015 - 9359203
Alignment:
| Q |
35 |
tccacgtggaagtctgccgcaacagcataaagatagcttttcgagtcggagctgatgcagggagttgtatccacatactcaggatcatcattcacttgtt |
134 |
Q |
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| T |
9359015 |
tccacgtagaagtctgccgcaaaagcataaagatagctttcggagtcggagttgatacagggagctgtatccacatactcaggatcatcattcacttgtt |
9359114 |
T |
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| Q |
135 |
tgctacacttcaagtatattatgtacccgtatgggaggccatacatataccaattatccattatttgatatggatcctcgttgttgata |
223 |
Q |
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| T |
9359115 |
tgctacaattcaagtatattatgtgcccgtatcggtggtcagaataataccaaacatccattatttgatatggatcctcgttgttgata |
9359203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 9335297 - 9335418
Alignment:
| Q |
43 |
gaagtctgccgcaacagcataaagatagcttttcgagtcggagctgatgcagggagttgtatccacatactcaggatcatcattcacttgtttgctacac |
142 |
Q |
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| T |
9335297 |
gaagtctgacgcaaaagcataaagatagcttttggagtcggagctgatgcagggagctgtatccacatactcagtatcatcattcacttgtttgctacac |
9335396 |
T |
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| Q |
143 |
ttcaagtatattatgtacccgt |
164 |
Q |
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| T |
9335397 |
ttcaagtatattatgtacccgt |
9335418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 158
Target Start/End: Complemental strand, 9245428 - 9245313
Alignment:
| Q |
43 |
gaagtctgccgcaacagcataaagatagcttttcgagtcggagctgatgcagggagttgtatccacatactcaggatcatcattcacttgtttgctacac |
142 |
Q |
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| T |
9245428 |
gaagtctgacgcaaaagcataaagatagcttttggagtcggagttgatacagggagctgtatccacatactcaggatcatcattcactgctttgctacat |
9245329 |
T |
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| Q |
143 |
ttcaagtatattatgt |
158 |
Q |
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| T |
9245328 |
ttcaagtatattatgt |
9245313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 15913117 - 15913025
Alignment:
| Q |
70 |
gcttttcgagtcggagctgatgcagggagttgtatccacatactcaggatcatcattcacttgtttgctacacttcaagtatattatgtaccc |
162 |
Q |
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| T |
15913117 |
gcttttggagtccgagctgatgcagggagcggtatccacgtactcaggatcatcattcactgatttgctacacttcaagtatattatgtaccc |
15913025 |
T |
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