View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_55 (Length: 249)
Name: NF1394_low_55
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 63 - 222
Target Start/End: Complemental strand, 43260705 - 43260546
Alignment:
| Q |
63 |
tgttatggatttgtcgcttcaccaagcaacttggtggagaggtcctccgtccttcaactattgttcaccttccttgcattttgtgcaaaattaccaacat |
162 |
Q |
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| T |
43260705 |
tgttatggatttgtcgcttcaccaagcaacttggtagagaggtcctccgtccttcaactattgttcaccttccttgcattttgtgcaaaattaccaacat |
43260606 |
T |
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| Q |
163 |
tctaatttcgttaaaaaattcaattaactgtcaccccaactaactccaacatattttata |
222 |
Q |
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| T |
43260605 |
tctaatttcgttaaaaaattcaattaactgccagcacaactaactccaacatattttata |
43260546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43260782 - 43260741
Alignment:
| Q |
1 |
tcatttgcatttttcttcttcttcttcttcattttaacaagt |
42 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
43260782 |
tcatttgcatttttcttcttcttcttcttcattttaacaagt |
43260741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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