View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1394_low_58 (Length: 243)

Name: NF1394_low_58
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1394_low_58
NF1394_low_58
[»] chr2 (19 HSPs)
chr2 (11-243)||(32502821-32503054)
chr2 (70-243)||(8033621-8033794)
chr2 (31-243)||(8033723-8033928)
chr2 (11-171)||(22191422-22191584)
chr2 (70-189)||(8033572-8033692)
chr2 (72-239)||(17658851-17659019)
chr2 (41-116)||(6511112-6511188)
chr2 (14-210)||(16311699-16311892)
chr2 (35-87)||(39760176-39760228)
chr2 (96-171)||(17658816-17658891)
chr2 (43-89)||(33939958-33940004)
chr2 (67-161)||(32502980-32503075)
chr2 (11-87)||(22191391-22191467)
chr2 (11-87)||(32503040-32503116)
chr2 (45-87)||(3116833-3116875)
chr2 (11-92)||(32013968-32014048)
chr2 (35-87)||(17658809-17658861)
chr2 (11-87)||(33940031-33940107)
chr2 (11-87)||(39760375-39760451)
[»] chr3 (29 HSPs)
chr3 (11-243)||(20124081-20124313)
chr3 (72-243)||(47337143-47337313)
chr3 (35-243)||(33428919-33429127)
chr3 (43-171)||(39840699-39840826)
chr3 (11-92)||(55447171-55447252)
chr3 (36-87)||(1163419-1163470)
chr3 (70-190)||(51862503-51862622)
chr3 (16-87)||(20124024-20124095)
chr3 (11-85)||(39840668-39840742)
chr3 (18-88)||(40472846-40472916)
chr3 (70-147)||(47337242-47337320)
chr3 (11-88)||(45965797-45965874)
chr3 (33-88)||(27812296-27812351)
chr3 (14-120)||(29504781-29504888)
chr3 (37-171)||(42045811-42045946)
chr3 (70-147)||(1163449-1163527)
chr3 (70-147)||(20124074-20124152)
chr3 (33-87)||(48338342-48338396)
chr3 (45-140)||(11413151-11413247)
chr3 (35-87)||(33429113-33429165)
chr3 (11-70)||(27812214-27812273)
chr3 (34-120)||(38181382-38181469)
chr3 (33-92)||(55446977-55447036)
chr3 (164-238)||(16298268-16298342)
chr3 (70-147)||(48338484-48338561)
chr3 (154-243)||(1163456-1163545)
chr3 (37-113)||(40472928-40473005)
chr3 (20-68)||(11411220-11411268)
chr3 (43-83)||(33429014-33429054)
[»] chr8 (17 HSPs)
chr8 (39-190)||(29490409-29490561)
chr8 (34-147)||(33229553-33229667)
chr8 (11-139)||(23961584-23961713)
chr8 (20-86)||(32029634-32029700)
chr8 (11-171)||(10028752-10028913)
chr8 (11-171)||(21136596-21136757)
chr8 (11-95)||(10028660-10028744)
chr8 (43-147)||(32029548-32029654)
chr8 (37-87)||(23768883-23768935)
chr8 (40-79)||(23961463-23961502)
chr8 (33-87)||(5840958-5841012)
chr8 (33-87)||(5847118-5847172)
chr8 (174-243)||(29490442-29490511)
chr8 (18-58)||(5840369-5840409)
chr8 (35-87)||(12220824-12220876)
chr8 (31-87)||(41424437-41424493)
chr8 (70-133)||(41424597-41424661)
[»] chr4 (25 HSPs)
chr4 (33-243)||(39051168-39051376)
chr4 (18-243)||(55264468-55264695)
chr4 (35-147)||(54090928-54091041)
chr4 (33-190)||(45122436-45122595)
chr4 (11-88)||(54091019-54091096)
chr4 (11-119)||(45921826-45921935)
chr4 (11-87)||(44137398-44137474)
chr4 (62-171)||(49448185-49448295)
chr4 (74-171)||(13119321-13119420)
chr4 (11-141)||(55283990-55284121)
chr4 (11-81)||(5162843-5162913)
chr4 (11-107)||(11383005-11383101)
chr4 (123-171)||(13119231-13119279)
chr4 (44-147)||(53924448-53924552)
chr4 (21-88)||(7402978-7403045)
chr4 (20-87)||(13119375-13119442)
chr4 (32-87)||(55264427-55264482)
chr4 (33-87)||(40942669-40942723)
chr4 (70-171)||(44137429-44137530)
chr4 (42-87)||(39051239-39051284)
chr4 (43-84)||(44137532-44137573)
chr4 (39-91)||(49448246-49448298)
chr4 (103-171)||(55264437-55264505)
chr4 (43-87)||(55264542-55264586)
chr4 (11-79)||(56087764-56087832)
[»] chr5 (25 HSPs)
chr5 (34-243)||(39643089-39643299)
chr5 (35-190)||(9900231-9900387)
chr5 (33-146)||(8285057-8285171)
chr5 (70-171)||(8839957-8840059)
chr5 (16-87)||(8285232-8285303)
chr5 (43-171)||(31051111-31051241)
chr5 (11-87)||(31046134-31046211)
chr5 (11-87)||(31066075-31066152)
chr5 (105-190)||(36184640-36184725)
chr5 (42-94)||(27354409-27354461)
chr5 (33-87)||(39643049-39643103)
chr5 (14-79)||(11275790-11275855)
chr5 (125-222)||(33676672-33676768)
chr5 (11-87)||(5971885-5971961)
chr5 (35-87)||(31065879-31065931)
chr5 (79-161)||(12640159-12640241)
chr5 (67-169)||(27354459-27354560)
chr5 (43-132)||(31046050-31046140)
chr5 (18-88)||(36184729-36184799)
chr5 (34-87)||(1189371-1189424)
chr5 (39-92)||(11275695-11275748)
chr5 (125-190)||(31051091-31051156)
chr5 (11-87)||(31051195-31051272)
chr5 (45-89)||(9637747-9637791)
chr5 (31-87)||(31050996-31051052)
[»] chr1 (20 HSPs)
chr1 (35-243)||(845021-845233)
chr1 (11-88)||(7790404-7790480)
chr1 (11-87)||(1818377-1818453)
chr1 (33-126)||(38783923-38784017)
chr1 (39-190)||(15395319-15395471)
chr1 (14-117)||(27293292-27293396)
chr1 (43-140)||(40649848-40649946)
chr1 (98-171)||(46410685-46410758)
chr1 (16-87)||(15395207-15395278)
chr1 (35-171)||(10595411-10595547)
chr1 (43-87)||(15395339-15395383)
chr1 (154-189)||(6061769-6061804)
chr1 (11-78)||(46410826-46410893)
chr1 (42-171)||(17347145-17347273)
chr1 (22-79)||(7790300-7790357)
chr1 (11-88)||(10377539-10377616)
chr1 (67-132)||(23399694-23399758)
chr1 (14-87)||(38576586-38576659)
chr1 (11-75)||(28504720-28504784)
chr1 (20-92)||(38576693-38576765)
[»] scaffold0050 (1 HSPs)
scaffold0050 (33-219)||(81997-82175)
[»] scaffold0340 (2 HSPs)
scaffold0340 (39-161)||(10910-11033)
scaffold0340 (39-87)||(10998-11046)
[»] chr6 (20 HSPs)
chr6 (64-189)||(21394388-21394507)
chr6 (32-149)||(21969173-21969291)
chr6 (35-147)||(32520096-32520209)
chr6 (44-171)||(26330227-26330355)
chr6 (35-132)||(17437677-17437776)
chr6 (11-90)||(19121976-19122055)
chr6 (14-88)||(5656462-5656536)
chr6 (35-88)||(3890026-3890079)
chr6 (35-88)||(32942389-32942442)
chr6 (18-87)||(21969268-21969337)
chr6 (34-88)||(5656571-5656625)
chr6 (33-87)||(17437556-17437610)
chr6 (33-87)||(26330310-26330364)
chr6 (154-219)||(8592163-8592227)
chr6 (9-58)||(16710442-16710491)
chr6 (35-88)||(19121887-19121940)
chr6 (11-87)||(8446952-8447028)
chr6 (11-87)||(8455756-8455832)
chr6 (71-147)||(8592182-8592258)
chr6 (55-91)||(17333413-17333449)
[»] scaffold0066 (2 HSPs)
scaffold0066 (39-171)||(12025-12152)
scaffold0066 (16-132)||(13902-14018)
[»] chr7 (17 HSPs)
chr7 (42-171)||(42709957-42710086)
chr7 (11-171)||(12427842-12428003)
chr7 (11-87)||(42709926-42710002)
chr7 (11-120)||(30935217-30935327)
chr7 (16-147)||(10524929-10525058)
chr7 (11-88)||(41008915-41008992)
chr7 (20-87)||(30165213-30165280)
chr7 (33-113)||(32296393-32296474)
chr7 (18-86)||(3248336-3248404)
chr7 (35-87)||(33384104-33384156)
chr7 (37-132)||(35660915-35661011)
chr7 (11-75)||(41008803-41008867)
chr7 (53-139)||(16953218-16953305)
chr7 (172-243)||(32296366-32296437)
chr7 (12-86)||(26752010-26752084)
chr7 (126-190)||(42710041-42710105)
chr7 (72-140)||(33384142-33384210)
[»] scaffold0528 (4 HSPs)
scaffold0528 (43-171)||(1700-1830)
scaffold0528 (11-87)||(1669-1746)
scaffold0528 (125-190)||(1785-1850)
scaffold0528 (31-87)||(1889-1945)
[»] scaffold0198 (1 HSPs)
scaffold0198 (35-140)||(12113-12219)
[»] scaffold0154 (2 HSPs)
scaffold0154 (11-87)||(6214-6290)
scaffold0154 (70-132)||(6064-6127)
[»] scaffold0022 (2 HSPs)
scaffold0022 (16-75)||(122547-122606)
scaffold0022 (34-86)||(62721-62773)
[»] scaffold0360 (1 HSPs)
scaffold0360 (16-58)||(4796-4838)


Alignment Details
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 32502821 - 32503054
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgt 109  Q
    ||||||||||||||||||   || ||| ||||| ||||| ||||||||| |||||||| | ||| ||||||||||||||||  || ||||||||||||||    
T  32502821 aagtcattctcaaattagttcctcactttattagtatttcaaaatagttcatgtctttgttaaatgtttctcaattagatcattgtctctatgtttttgt 32502920  T
Q  110 cacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaatattatcaaaagtttttcaattagttatgggtctctatgtttt 209  Q
    |||||||||||||| |||||||| ||| ||| |||||| |||  |||||||| ||||||||||||||||||| |||||||| | |  |||||||||||||    
T  32502921 cacatgacgagacatttaattgaaaaaattttgacaaagacaaagactattttgaaatattatcaaaagtttatcaattagatctctgtctctatgtttt 32503020  T
Q  210 tgtcacatgatgagagatttagttgagaaacttt 243  Q
    | ||| |||| ||| || ||| ||||||| ||||    
T  32503021 tatcatatgacgagggacttaattgagaatcttt 32503054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 243
Target Start/End: Complemental strand, 8033794 - 8033621
Alignment:
Q  70 tcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaata 168  Q
    |||||||||||||||||  ||| ||| ||||||| |||||||| ||||||||| |||||||||| |||||||  | ||| |||  ||||||||  ||| |    
T  8033794 tcaaaagtttctcaattcaatctatgtctctatgattttgtcatatgacgagagacttaattgagaaacttttaa-aaagacaatgactattttaaaaga 8033696  T
Q  169 ttatcaaaagtttttcaattagttatgggtctctatgtttttgtcacatgatgagagatttagttgagaaacttt 243  Q
    || ||||||||||||||||||| ||   |||||||||||||||||| |||| |||||| ||| ||||||||||||    
T  8033695 ttgtcaaaagtttttcaattagatacatgtctctatgtttttgtcatatgacgagagacttaattgagaaacttt 8033621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 31 - 243
Target Start/End: Complemental strand, 8033928 - 8033723
Alignment:
Q  31 tctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatgctctatgtttttgtcacatgacgagacacttaatt 130  Q
    ||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||    ||| ||||||||||  || |||| ||||||||||    
T  8033928 tctgactttattaatattttaaaatggtttatgtctttgtcaaaagtttctcaattagatcc-ccatctctgtttttgtcgaataacgaaacacttaatt 8033830  T
Q  131 gacaaactttggacaaaaacagcgactatttcgaaatattatcaaaagtttttcaattagttatgggtctctatgtttttgtcacatgatgagagattta 230  Q
    || |||||||       ||||  |||||||| |||| ||| |||||||||| ||||||   | |  ||||||||| |||||||| |||| |||||| |||    
T  8033829 gataaacttt------taacaatgactattttgaaagattgtcaaaagtttctcaattcaatctatgtctctatgattttgtcatatgacgagagactta 8033736  T
Q  231 gttgagaaacttt 243  Q
     ||||||||||||    
T  8033735 attgagaaacttt 8033723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 22191584 - 22191422
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtc-tttatcaaaagtttctcaattagatccat-gctctatgtttttg 108  Q
    |||||| |||||||||||   ||||||||||||||||||||||||||| |||||| ||| | |||||||| |||||||||| |||  |||| | ||||||    
T  22191584 aagtcactctcaaattagtccctgactctattaatattttaaaatagtctatgtcttttgttaaaagtttttcaattagattcatatctctttatttttg 22191485  T
Q  109 tcacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaatatta 171  Q
    ||||||||||||  ||||||| || ||||||| |||||| |||  ||||||||  ||||||||    
T  22191484 tcacatgacgagggacttaatagagaaacttttgacaaagacaaagactattttaaaatatta 22191422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 8033692 - 8033572
Alignment:
Q  70 tcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaata 168  Q
    |||||||||| |||||||||| |||| |||||||||||||||| ||||||||| |||||||||| |||||||  ||||| |||  || ||||| |||| |    
T  8033692 tcaaaagtttttcaattagatacatgtctctatgtttttgtcatatgacgagagacttaattgagaaacttttaacaaagacaaggattattttgaaaga 8033593  T
Q  169 ttatcaaaagtttttcaatta 189  Q
    || |||||||||| |||||||    
T  8033592 ttgtcaaaagtttctcaatta 8033572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 239
Target Start/End: Complemental strand, 17659019 - 17658851
Alignment:
Q  72 aaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaatatt 170  Q
    |||||||| |||||||||||  |  |||| |||||||||||| |||||||| ||||  |||| ||||||| |||||| | |  |||||||| ||||||||    
T  17659019 aaaagtttttcaattagatcgttttctctttgtttttgtcacttgacgagagacttggttgaaaaacttttgacaaagatattgactattttgaaatatt 17658920  T
Q  171 atcaaaagtttttcaattagttatgggtctctatgtttttgtcacatgatgagagatttagttgagaaa 239  Q
     ||||||  ||||||||||| |     ||||| |||||||||||||||| |||||| ||| ||||||||    
T  17658919 gtcaaaatcttttcaattagatcattttctctttgtttttgtcacatgacgagagacttaattgagaaa 17658851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 6511188 - 6511112
Alignment:
Q  41 ttaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatga 116  Q
    ||||||||||||| |||||| ||| ||| ||||||||||||||||| | |||||| || ||||||||||||||||||    
T  6511188 ttaatattttaaattagtttctgtgtttgtcaaaagtttctcaatttggtccatgtctttatgtttttgtcacatga 6511112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 16311892 - 16311699
Alignment:
Q  14 tcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagat--ccatgctctatgtttttgtca 111  Q
    |||||||||||||||  | |||||||  |||||||| || ||||||||||||||  |||||| ||||| ||||||||  | || ||||||||||| ||||    
T  16311892 tcattctcaaattagtctttgactct--taatatttcaatatagtttatgtcttcgtcaaaaatttcttaattagatttctat-ctctatgtttt-gtca 16311797  T
Q  112 catgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaatattatcaaaagtttttcaattagttatgggtctctatgttttt 210  Q
    ||||| ||| || ||||||||  |||||| || |||  ||| ||| ||||  ||||||| | |||||||| |||||||| |||  ||||||||||||||    
T  16311796 catgatgaggcaattaattgaacaacttttgataaaggcagagaccattttaaaatattgtgaaaagtttctcaattagatat-tgtctctatgttttt 16311699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 39760176 - 39760228
Alignment:
Q  35 actctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||    
T  39760176 actctattaatatttcaaaatagtctatgtttttatcaaaagtttctcaatta 39760228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 17658891 - 17658816
Alignment:
Q  96 ctctatgtttttgtcacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaatatta 171  Q
    |||| ||||||||||||||||||||| |||||||||| ||| ||| |||||| |||  |||||||| |||||||||    
T  17658891 ctctttgtttttgtcacatgacgagagacttaattgagaaatttttgacaaagacaatgactattttgaaatatta 17658816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 33939958 - 33940004
Alignment:
Q  43 aatattttaaaatagtttatgtctttatcaaaagtttctcaattaga 89  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||    
T  33939958 aatattttaaaatagtatatgtctttgtcaaaagtttctcaattaga 33940004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 32502980 - 32503075
Alignment:
Q  67 ttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaaactttggacaaaaacagcgactattt 161  Q
    ||||||||||||| |||||||||||  || |||||||||||| ||| ||||||||  |||||||||| || |||| |||||| |||  ||||||||    
T  32502980 ttatcaaaagtttatcaattagatctctgtctctatgtttttatcatatgacgagggacttaattgagaatcttttgacaaagacaatgactattt 32503075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 22191391 - 22191467
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||||||| |||||||||  | | |||  ||||||||||||||||||| | ||||||| ||||||||||||| ||||    
T  22191391 aagtcattttcaaattagtctataacttaattaatattttaaaatagtctttgtctttgtcaaaagtttctctatta 22191467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 32503116 - 32503040
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||||||| |||||||||  ||  |||||||| |||||||||||||||   ||||||| ||||||| ||||||||||    
T  32503116 aagtcattatcaaattagtctcacactctattgatattttaaaatagtcattgtctttgtcaaaagattctcaatta 32503040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 3116875 - 3116833
Alignment:
Q  45 tattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    ||||||||||||||| || ||||| ||||||||||||||||||    
T  3116875 tattttaaaatagttcatatctttgtcaaaagtttctcaatta 3116833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 32014048 - 32013968
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatcc 92  Q
    |||| |||||||||||||  | |||||||||| |||||| ||||||||   ||||||| |||||| ||||||||||| ||||    
T  32014048 aagtgattctcaaattagtctatgactctattgatatttcaaaatagtcactgtctttgtcaaaa-tttctcaattaaatcc 32013968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 17658809 - 17658861
Alignment:
Q  35 actctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    ||||||||||||||| ||||||||   ||||||| |||||| |||||||||||    
T  17658809 actctattaatatttcaaaatagtcattgtctttgtcaaaaatttctcaatta 17658861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 33940107 - 33940031
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||| |||||||||||||    ||||| ||||||||||| ||||||||   ||| ||| ||||||||||||||||||    
T  33940107 aagtgattctcaaattagtcgttgactttattaatatttcaaaatagtcactgtttttttcaaaagtttctcaatta 33940031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 39760451 - 39760375
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||| |||||||||||||    ||||| ||||||||||| ||||||||| || ||||| |||||| | |||||||||    
T  39760451 aagtgattctcaaattagtccatgactatattaatatttcaaaatagttcatatctttgtcaaaaatctctcaatta 39760375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 20124313 - 20124081
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgt 109  Q
    |||||||| |||||||||  ||||||||||| ||||||| ||||||||   ||| ||| |||||||||| ||||||||||||||| ||||||||||||||    
T  20124313 aagtcatt-tcaaattagtctctgactctatcaatatttcaaaatagtcattgtttttgtcaaaagtttttcaattagatccatgtctctatgtttttgt 20124215  T
Q  110 cacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaatattatcaaaagtttttcaattagttatgggtctctatgtttt 209  Q
    ||| | |||||| ||||||| || || |||| |||||  |||| |||||||| |||||||  |||||||||| |||| ||| |    ||||  |||||||    
T  20124214 cacctaacgagatacttaatcgaaaagcttttgacaaggacagagactattttgaaatatagtcaaaagtttctcaactagatcattgtcttgatgtttt 20124115  T
Q  210 tgtcacatgatgagagatttagttgagaaacttt 243  Q
    ||| |||||| |||||| ||| ||||||||||||    
T  20124114 tgttacatgacgagagacttaattgagaaacttt 20124081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 72 - 243
Target Start/End: Original strand, 47337143 - 47337313
Alignment:
Q  72 aaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaatatt 170  Q
    ||||||||| ||||||||| |||| ||||||||||  |||||||||||||||| ||||| || ||||||| || |||| ||  |||||||| ||||||||    
T  47337143 aaaagtttcccaattagattcatgtctctatgttt--gtcacatgacgagacaattaatcgaaaaacttttgataaaaccaatgactattttgaaatatt 47337240  T
Q  171 atcaaaagtttttcaattagttatgggtctctatgtttttgtcacatgatgagagatttagttgagaaacttt 243  Q
     ||||||||||||||||||| |    |||||||||||||||||| || | ||| || ||| ||||||||||||    
T  47337241 gtcaaaagtttttcaattagatccctgtctctatgtttttgtcatataacgagggacttaattgagaaacttt 47337313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 243
Target Start/End: Original strand, 33428919 - 33429127
Alignment:
Q  35 actctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatgctctatgtttttgtcacatgacgagacacttaattgaca 134  Q
    ||||||||||||||| ||||||||| || ||||| |||||||||||||||||| |||    |||||||||||||| | ||||||||  | ||   ||| |    
T  33428919 actctattaatatttcaaaatagttcatatctttgtcaaaagtttctcaattaaatcttctctctatgtttttgttatatgacgagggatttggctgaga 33429018  T
Q  135 aactttggacaaaaacagcgactatttcgaaatattatcaaaagtttttcaattagttatgggtctctatgtttttgtcacatgatgagagatttagttg 234  Q
    |||||| |||||| ||    ||||||| |||||||| ||||| |||| |||||||| |     ||||| |||||||||||||||| || ||| ||| |||    
T  33429019 aacttttgacaaagacgtaaactattttgaaatattgtcaaatgtttctcaattagattcatttctctttgtttttgtcacatgacgaaagacttaattg 33429118  T
Q  235 agaaacttt 243  Q
    | |||||||    
T  33429119 aaaaacttt 33429127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 171
Target Start/End: Complemental strand, 39840826 - 39840699
Alignment:
Q  43 aatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaaactttg 141  Q
    ||||||| ||||||||  ||| |||| |||||||||||||||||||| |||||  ||||||||| | ||||||||||||  |||| ||||| |||||||     
T  39840826 aatatttcaaaatagtccatgcctttgtcaaaagtttctcaattagacccatgtttctatgtttat-tcacatgacgagggactt-attgagaaactttt 39840729  T
Q  142 gacaaaaacagcgactatttcgaaatatta 171  Q
    ||||||||||  |||||||| |||||||||    
T  39840728 gacaaaaacaatgactattttgaaatatta 39840699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 55447252 - 55447171
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatcc 92  Q
    |||| |||||||||| ||  ||||||||| |||||||||||||||||| | ||||||| |||||||||||||||||| ||||    
T  55447252 aagtgattctcaaatcagtctctgactctcttaatattttaaaatagtctctgtctttctcaaaagtttctcaattaaatcc 55447171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 1163419 - 1163470
Alignment:
Q  36 ctctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  1163419 ctctattaatattttaaaatagtttatgtgtttgtcaaaagtttctcaatta 1163470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 190
Target Start/End: Original strand, 51862503 - 51862622
Alignment:
Q  70 tcaaaagtttctcaattagatccatgct-ctatgtttttgtcacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaata 168  Q
    ||||||||||||||||||| | |||| | || ||||||||||||||||| |||||||||||||  | | ||| |||||| |||  |||||||| ||||||    
T  51862503 tcaaaagtttctcaattaggttcatgtttctgtgtttttgtcacatgactagacacttaattg--agatttttgacaaagacaatgactattttgaaata 51862600  T
Q  169 ttatcaaaagtttttcaattag 190  Q
    || |||||| ||| ||||||||    
T  51862601 ttgtcaaaaatttctcaattag 51862622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 20124024 - 20124095
Alignment:
Q  16 attctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||||||||||||||  | ||| ||||||||||| ||||||||| || ||||| ||||||||||||||||||    
T  20124024 attctcaaattagcacttaactttattaatatttcaaaatagttcatctctttgtcaaaagtttctcaatta 20124095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 39840668 - 39840742
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaat 85  Q
    |||| |||||||||||||  ||||||||||||||||||| ||||||||   ||| ||| ||||||||||||||||    
T  39840668 aagtgattctcaaattagtctctgactctattaatatttcaaaatagtcattgtttttgtcaaaagtttctcaat 39840742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 40472846 - 40472916
Alignment:
Q  18 tctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattag 88  Q
    |||||||||||  | |||||||||||| |||||||| |||||||| ||||| ||||||||||||| |||||    
T  40472846 tctcaaattagtctttgactctattaaaattttaaactagtttatttctttgtcaaaagtttctcgattag 40472916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 47337242 - 47337320
Alignment:
Q  70 tcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaaactttggacaaa 147  Q
    |||||||||| |||||||||||| || |||||||||||||||| || |||||  |||||||||| ||||||| ||||||    
T  47337242 tcaaaagtttttcaattagatccctgtctctatgtttttgtcatataacgagggacttaattgagaaacttttgacaaa 47337320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 45965874 - 45965797
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattag 88  Q
    |||||| |||||||||||  | ||||||||||||||||| ||| |||||  | ||||| |||||||||||||||||||    
T  45965874 aagtcactctcaaattagtttgtgactctattaatatttcaaactagttattatctttttcaaaagtttctcaattag 45965797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 27812351 - 27812296
Alignment:
Q  33 tgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattag 88  Q
    ||||||||||| ||||| |||||||| ||||||||| | |||||||||||||||||    
T  27812351 tgactctattactatttaaaaatagtctatgtctttgttaaaagtttctcaattag 27812296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 29504781 - 29504888
Alignment:
Q  14 tcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcac 112  Q
    |||||||||||||||    | |||||| |||||||||||| ||||   ||||||||| |||||||| |||||||| || ||| || |||| |||||||||    
T  29504781 tcattctcaaattagtccataactctaataatattttaaactagtcattgtctttattaaaagtttttcaattaggtcaatgtctttatgcttttgtcac 29504880  T
Q  113 atgacgag 120  Q
    ||||||||    
T  29504881 atgacgag 29504888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 171
Target Start/End: Complemental strand, 42045946 - 42045811
Alignment:
Q  37 tctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaa 135  Q
    ||||||||||||| |||||||| ||||||||| |||||||||| ||||||  |  ||||  ||||||||||| |||||||   |   |||||||||| ||    
T  42045946 tctattaatatttcaaaatagtatatgtctttgtcaaaagtttttcaattgaacacatgtttctatgtttttttcacatggtaaatgacttaattgaaaa 42045847  T
Q  136 actttggacaaaaacagcgactatttcgaaatatta 171  Q
    ||||| |||| | |||  |||||||| |||||||||    
T  42045846 acttttgacatagacaatgactattttgaaatatta 42045811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 1163527 - 1163449
Alignment:
Q  70 tcaaaagtttctcaattagatccatgct-ctatgtttttgtcacatgacgagacacttaattgacaaactttggacaaa 147  Q
    |||||||||| ||||||||| | ||| | |||| ||||| ||||||||||||| |||||||||| ||||||| ||||||    
T  1163527 tcaaaagtttttcaattagacctatgtttctatatttttttcacatgacgagagacttaattgagaaacttttgacaaa 1163449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 20124152 - 20124074
Alignment:
Q  70 tcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaaactttggacaaa 147  Q
    ||||||||||||||| ||||||  || ||  |||||||||| ||||||||||| |||||||||| ||||||| ||||||    
T  20124152 tcaaaagtttctcaactagatcattgtcttgatgtttttgttacatgacgagagacttaattgagaaacttttgacaaa 20124074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 48338342 - 48338396
Alignment:
Q  33 tgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||||||||||||| || ||||||||  |||||||| ||||||||||||||||||    
T  48338342 tgactctattaatacttcaaaatagtccatgtctttgtcaaaagtttctcaatta 48338396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 11413247 - 11413151
Alignment:
Q  45 tattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaaacttt 140  Q
    ||||| |||||||| | ||||||  ||||||||||||||||||||||  || ||  |||||||| ||||||||||||   ||||||||| |||||||    
T  11413247 tatttcaaaatagtatttgtcttagtcaaaagtttctcaattagatctttgtcttaatgtttttatcacatgacgaggggcttaattgagaaacttt 11413151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 33429165 - 33429113
Alignment:
Q  35 actctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||||||||||||||||||||| |  || |||||||||||||||| |||||||    
T  33429165 actctattaatattttaaaataatcaatatctttatcaaaagtttttcaatta 33429113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 27812214 - 27812273
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttat 70  Q
    |||||||||| |||||||  ||||| ||||||||||||| ||| ||||| ||||||||||    
T  27812214 aagtcattcttaaattagtctctgagtctattaatatttcaaattagttcatgtctttat 27812273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 38181382 - 38181469
Alignment:
Q  34 gactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccat-gctctatgtttttgtcacatgacgag 120  Q
    |||||||||||||||| ||| |||| |   ||||||||||||||||||||||| ||||  |  || |||||||||||||||| |||||    
T  38181382 gactctattaatatttcaaactagtctccatctttatcaaaagtttctcaatttgatcattatctttatgtttttgtcacatcacgag 38181469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 55446977 - 55447036
Alignment:
Q  33 tgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatcc 92  Q
    ||||||||||||||||| ||||||||  |||||||| | |||| ||||||||||| ||||    
T  55446977 tgactctattaatatttcaaaatagtccatgtctttgttaaaattttctcaattaaatcc 55447036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 16298342 - 16298268
Alignment:
Q  164 aaatattatcaaaagtttttcaattagttatgggtctctatgtttttgtcacatgatgagagatttagttgagaa 238  Q
    ||||||| || |||||||||||||||| |    |||||||| ||||||||| |||||||| |||||| |||||||    
T  16298342 aaatattgtccaaagtttttcaattagatcaatgtctctatatttttgtcatatgatgagggatttaattgagaa 16298268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 48338484 - 48338561
Alignment:
Q  70 tcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaaactttggacaaa 147  Q
    |||||||||||||||||| |||||||  ||||||||||| ||||| ||| ||| | |||||||| ||||||| ||||||    
T  48338484 tcaaaagtttctcaattaaatccatgtttctatgttttt-tcacacgaccagagatttaattgagaaacttttgacaaa 48338561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 1163545 - 1163456
Alignment:
Q  154 gactatttcgaaatattatcaaaagtttttcaattagttatgggtctctatgtttttgtcacatgatgagagatttagttgagaaacttt 243  Q
    ||||| || |||||| | |||||||||||||||||||   |  || ||||| ||||| |||||||| |||||| ||| ||||||||||||    
T  1163545 gactactttgaaatactgtcaaaagtttttcaattagacctatgtttctatatttttttcacatgacgagagacttaattgagaaacttt 1163456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 40473005 - 40472928
Alignment:
Q  37 tctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcaca 113  Q
    ||||||||||||||||| |||| | | | ||| ||||||||||||||||||| |  ||| || |||||||||||||||    
T  40473005 tctattaatattttaaattagtatttatttttgtcaaaagtttctcaattaggtatatgtctttatgtttttgtcaca 40472928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 11411220 - 11411268
Alignment:
Q  20 tcaaattagcatctgactctattaatattttaaaatagtttatgtcttt 68  Q
    |||||||||  |||||||||||||| |||| |||||||| |||||||||    
T  11411220 tcaaattagtttctgactctattaacatttcaaaatagtatatgtcttt 11411268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 33429054 - 33429014
Alignment:
Q  43 aatattttaaaatagtttatgtctttatcaaaagtttctca 83  Q
    ||||||| ||||||||||| |||||| ||||||||||||||    
T  33429054 aatatttcaaaatagtttacgtctttgtcaaaagtttctca 33429014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 29490409 - 29490561
Alignment:
Q  39 tattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaaac 137  Q
    |||||||||||||||||||||| ||||||| | ||||||||||||||||||||  || |||| |||||||| |||||||||||||| ||| |||| ||||    
T  29490409 tattaatattttaaaatagtttttgtctttgtaaaaagtttctcaattagatctctgtctctgtgtttttggcacatgacgagacatttatttgagaaac 29490508  T
Q  138 tttggacaaaaacagcgactatttcgaaatattatcaaaagtttttcaattag 190  Q
    ||| || ||| | ||  ||||||| ||||||||||||||||||| ||||||||    
T  29490509 ttttgataaagatagacactattttgaaatattatcaaaagtttctcaattag 29490561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 147
Target Start/End: Complemental strand, 33229667 - 33229553
Alignment:
Q  34 gactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattga 132  Q
    |||| ||||||||||||||| |||| | | | ||| ||||||||||||||||||||||| || || ||||||||||||||||||||||  || |||||||    
T  33229667 gactttattaatattttaaattagtctctctgtttgtcaaaagtttctcaattagatccctgtctttatgtttttgtcacatgacgagggacctaattga 33229568  T
Q  133 caaactttggacaaa 147  Q
     ||||||| ||||||    
T  33229567 gaaacttttgacaaa 33229553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 23961713 - 23961584
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgt 109  Q
    |||||||| |||||| ||  ||||| || |||||||||| ||||||||   |  |||||||||||||||| ||||||||| |||| |||||||| |||||    
T  23961713 aagtcattttcaaatcagtctctgattcaattaatatttcaaaatagtccctaactttatcaaaagtttcacaattagattcatgtctctatgtctttgt 23961614  T
Q  110 cacatgacgagacacttaattgacaaactt 139  Q
    ||| |||| |||||||||||||| ||||||    
T  23961613 cacttgacaagacacttaattgaaaaactt 23961584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 32029700 - 32029634
Alignment:
Q  20 tcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatt 86  Q
    |||||||||  |||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||    
T  32029700 tcaaattagtctctgactctatttatattttaaaatagttcatgtctttgtcaaaaatttctcaatt 32029634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 10028752 - 10028913
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgt 109  Q
    ||||||||||||||||||   | |||||||||||||||| |||  ||| | | |||||  |||||||||||||||||| |||||| || |||||||||||    
T  10028752 aagtcattctcaaattagtcaccgactctattaatatttcaaatcagtctctatctttgccaaaagtttctcaattaggtccatgtctttatgtttttgt 10028851  T
Q  110 cacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaatatta 171  Q
    ||| | | |||| ||  |||||| |||| || || ||| ||| |||||| || |||||||||    
T  10028852 cacttaatgagagaccaaattgaaaaacctttgaaaaagacaacgactagtttgaaatatta 10028913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 21136596 - 21136757
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagat-ccatgctctatgtttttgt 109  Q
    ||||||||||||||||||  | ||||||||||||||||| ||||||||   | ||||| |||||||||| |||||||| | || | || |||  ||||||    
T  21136596 aagtcattctcaaattagtctttgactctattaatatttcaaaatagtccttatctttgtcaaaagtttttcaattaggtccctttctttatacttttgt 21136695  T
Q  110 cacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaatatta 171  Q
    ||| |||||| | || ||||||| ||  ||| |||||| | || |||||||| |||||||||    
T  21136696 cacttgacgaaaaacctaattgagaattttttgacaaagatagtgactattttgaaatatta 21136757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 10028660 - 10028744
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg 95  Q
    ||||||||||||||||||   |||||||||||||||||| ||| |||| | | || ||  |||||||||||||||||| ||||||    
T  10028660 aagtcattctcaaattagtcactgactctattaatatttcaaattagtctttatccttgccaaaagtttctcaattaggtccatg 10028744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 147
Target Start/End: Original strand, 32029548 - 32029654
Alignment:
Q  43 aatattttaaaatagtttatgtcttta-tcaaaagtttctcaattagatccatgct-ctatgtttttgtcacatgacgagacacttaattgacaaacttt 140  Q
    ||||||| |||||||| |||||||||  |||||||||||||||||| | ||||| | |||||||||| ||||||||| ||  ||| |||||| ||| |||    
T  32029548 aatatttcaaaatagtctatgtcttttgtcaaaagtttctcaattaaacccatgtttctatgtttttttcacatgacaagggactaaattgagaaatttt 32029647  T
Q  141 ggacaaa 147  Q
     ||||||    
T  32029648 tgacaaa 32029654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 23768935 - 23768883
Alignment:
Q  37 tctattaatatttt--aaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    ||||||||||||||  |||||||||||||| ||| ||||||||||||||||||    
T  23768935 tctattaatatttttcaaaatagtttatgtttttgtcaaaagtttctcaatta 23768883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 23961463 - 23961502
Alignment:
Q  40 attaatattttaaaatagtttatgtctttatcaaaagttt 79  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  23961463 attaatattttaaaatagtttttatctttatcaaaagttt 23961502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 5841012 - 5840958
Alignment:
Q  33 tgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    ||||||||||||||||||||  |||||| | |||||||||||||| ||| |||||    
T  5841012 tgactctattaatattttaatttagtttctatctttatcaaaagtgtctgaatta 5840958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 5847172 - 5847118
Alignment:
Q  33 tgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    ||||||||||||||||||||  |||||| | |||||||||||||| ||| |||||    
T  5847172 tgactctattaatattttaatttagtttctatctttatcaaaagtgtctgaatta 5847118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 29490442 - 29490511
Alignment:
Q  174 aaaagtttttcaattagttatgggtctctatgtttttgtcacatgatgagagatttagttgagaaacttt 243  Q
    |||||||| |||||||| | |  |||||| |||||||| ||||||| |||| ||||| ||||||||||||    
T  29490442 aaaagtttctcaattagatctctgtctctgtgtttttggcacatgacgagacatttatttgagaaacttt 29490511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 5840369 - 5840409
Alignment:
Q  18 tctcaaattagcatctgactctattaatattttaaaatagt 58  Q
    |||||||||||  ||||| ||||||||||||||||||||||    
T  5840369 tctcaaattagtctctgattctattaatattttaaaatagt 5840409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 12220876 - 12220824
Alignment:
Q  35 actctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    ||||| |||||||||||||||| | | ||||||| | ||||||||||||||||    
T  12220876 actcttttaatattttaaaataatctttgtctttgttaaaagtttctcaatta 12220824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 41424437 - 41424493
Alignment:
Q  31 tctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    ||||||||||||||||||||||| |||||| | | ||| |||||| ||| |||||||    
T  41424437 tctgactctattaatattttaaattagtttttatttttgtcaaaaatttttcaatta 41424493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 41424661 - 41424597
Alignment:
Q  70 tcaaaagtttctcaattagatccatgc-tctatgtttttgtcacatgacgagacacttaattgac 133  Q
    |||||||||||||||||| |||  ||| ||||||||||||||| ||||||||  | |||||||||    
T  41424661 tcaaaagtttctcaattatatcattgcctctatgtttttgtcatatgacgaggaatttaattgac 41424597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 243
Target Start/End: Complemental strand, 39051376 - 39051168
Alignment:
Q  33 tgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattg 131  Q
    ||||||||||||||||||||||||||   ||||||| ||||||||||||||||||||||  || || |||||||||||| |||||| ||  |||||||||    
T  39051376 tgactctattaatattttaaaatagtcactgtctttgtcaaaagtttctcaattagatcattgtctttatgtttttgtcgcatgacaag--acttaattg 39051279  T
Q  132 acaaactttggacaaaaacagcgactatttcgaaatattatcaaaagtttttcaattagttatgggtctctatgtttttgtcacatgatgagagatttag 231  Q
    | ||||||| ||  || |||| |||||||| ||||||||||| ||||||| |||| ||| | |  |||| ||| |||||||||||||| ||| || |||     
T  39051278 agaaacttttgatcaagacagagactattttgaaatattatc-aaagtttctcaactagatctctgtctatatatttttgtcacatgacgagtgacttaa 39051180  T
Q  232 ttgagaaacttt 243  Q
    ||||||||||||    
T  39051179 ttgagaaacttt 39051168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 55264695 - 55264468
Alignment:
Q  18 tctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatga 116  Q
    |||||||||||  ||||| ||||||||||||| |||| ||| | ||||||| ||||||||||||||||||  |||  | ||||||||||||||||||||     
T  55264695 tctcaaattagtctctgaatctattaatatttcaaaagagtctgtgtctttgtcaaaagtttctcaattaattccccgtctctatgtttttgtcacatgg 55264596  T
Q  117 cgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaatattatcaaaagtttttcaattagttatgggtctc-tatgtttttgtcac 215  Q
      |   |||||||||| ||||||| |||||| |||  |||||||| |||||||| |||||||||| ||||||||   |   |||| | | ||||||||||    
T  55264595 atatggacttaattgagaaacttttgacaaagacattgactattttgaaatattgtcaaaagtttctcaattagacttctttctcttctttttttgtcac 55264496  T
Q  216 atgatgagagatttagttgagaaacttt 243  Q
    ||||| ||||||||| |||| |||||||    
T  55264495 atgataagagatttaattgaaaaacttt 55264468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 54090928 - 54091041
Alignment:
Q  35 actctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgac 133  Q
    ||||| ||||||||| ||| |||| ||||||||| || ||| ||||||||| ||||||| | |  ||||||||||||||||||||||  || |||||||     
T  54090928 actctgttaatatttcaaactagtctatgtctttgtcgaaactttctcaataagatccaggtcattatgtttttgtcacatgacgagggacctaattgag 54091027  T
Q  134 aaactttggacaaa 147  Q
    ||||||||||||||    
T  54091028 aaactttggacaaa 54091041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 190
Target Start/End: Complemental strand, 45122595 - 45122436
Alignment:
Q  33 tgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattg 131  Q
    ||||| |||||||||||||||||| ||||||||||| | ||| |||| |||||||||| | || |  ||| ||||| ||||||||| |||||||||||      
T  45122595 tgactttattaatattttaaaataatttatgtctttgtgaaatgtttttcaattagattcctgtccttatatttttatcacatgacaagacacttaatca 45122496  T
Q  132 acaaa-ctttggacaaaaacagcgactatttcgaaatattatcaaaagtttttcaattag 190  Q
    | |||  ||| || |||||||  || ||||| |||||||||||||||| |||| ||||||    
T  45122495 aaaaattttttgataaaaacaatgattattttgaaatattatcaaaagatttttaattag 45122436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 54091096 - 54091019
Alignment:
Q  11 aagtcattctcaaattag-catctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattag 88  Q
    |||||||||||||||||| ||| |||||| |||||||||||||| |||| ||||||||| || ||||||||||||||||    
T  54091096 aagtcattctcaaattagtcat-tgactcaattaatattttaaactagtatatgtctttgtccaaagtttctcaattag 54091019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 45921935 - 45921826
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgt 109  Q
    ||||||||||| ||||||  ||||||| ||||||||||||||| ||  || | ||||| |||||||||| |||||||| ||  || || |||||||||||    
T  45921935 aagtcattctcgaattagtctctgactttattaatattttaaagtaacttttttctttgtcaaaagtttatcaattaggtcattgtctttatgtttttgt 45921836  T
Q  110 cacatgacga 119  Q
    ||||||||||    
T  45921835 cacatgacga 45921826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 44137398 - 44137474
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||| |||||||||||||  ||||||||||||||||||| |||||||| | ||||||| |||||| ||| |||||||    
T  44137398 aagtgattctcaaattagtctctgactctattaatatttcaaaatagtatctgtctttgtcaaaaatttatcaatta 44137474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 171
Target Start/End: Original strand, 49448185 - 49448295
Alignment:
Q  62 tgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaaactttggacaaaaacagcgactatt 160  Q
    ||||||| ||||||||||||||||||||||  || || ||||||||||||| ||||||||  |  ||||||| ||||||| |||||| |||  ||||| |    
T  49448185 tgtctttgtcaaaagtttctcaattagatcactgtctttatgtttttgtcatatgacgagcgatctaattgataaacttttgacaaagacaaagactagt 49448284  T
Q  161 tcgaaatatta 171  Q
    | |||||||||    
T  49448285 ttgaaatatta 49448295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 13119321 - 13119420
Alignment:
Q  74 aagtttctcaattagatccatg-ctctatg-tttttgtcacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaatatta 171  Q
    ||||||||||||||||||||||  |||||| ||||| || || ||||||  |||||||||| |||||||  ||||| |||| |||||||| |||||||||    
T  13119321 aagtttctcaattagatccatgtttctatgttttttttcccacgacgagggacttaattgagaaacttttaacaaagacagggactattttgaaatatta 13119420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 55284121 - 55283990
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccat-gctctatgtttttgt 109  Q
    |||||||| | |||||||  ||| | ||||||||||||| ||  |||||| |||||||  ||||||||| || ||||||||| |  || |||||||||||    
T  55284121 aagtcattattaaattagtctctaattctattaatatttcaatctagtttctgtctttgccaaaagtttttcgattagatccttatctttatgtttttgt 55284022  T
Q  110 cacatgacgagacacttaattgacaaactttg 141  Q
     |||||| |||| || ||||||| ||||||||    
T  55284021 tacatgatgagagacctaattgataaactttg 55283990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 5162843 - 5162913
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttct 81  Q
    |||||| |||||||||||  ||| ||||||||||||||| ||| |||| | ||||||| ||||||||||||    
T  5162843 aagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 5162913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 11383101 - 11383005
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgttttt 107  Q
    |||| ||| |||||||||  | ||||| || |||||||||||||||||  |||||||| |||||||||||| ||||| |||||||  |||||||||||    
T  11383101 aagtgattatcaaattagtctatgactttagtaatattttaaaatagtc-atgtctttgtcaaaagtttcttaattaaatccatgtttctatgttttt 11383005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 13119279 - 13119231
Alignment:
Q  123 acttaattgacaaactttggacaaaaacagcgactatttcgaaatatta 171  Q
    |||||||||| ||||||| |||||| ||||||||||||| |||||||||    
T  13119279 acttaattgagaaacttttgacaaagacagcgactattttgaaatatta 13119231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 53924552 - 53924448
Alignment:
Q  44 atattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaaactttgg 142  Q
    |||||||||| || ||||| | ||| |||||||||| |||||||||||  || || |||||||||||||||||  |||  || ||||||| ||||||| |    
T  53924552 atattttaaactaatttatctttttgtcaaaagtttttcaattagatcattgtctttatgtttttgtcacatggtgaggaacgtaattgagaaacttttg 53924453  T
Q  143 acaaa 147  Q
    |||||    
T  53924452 acaaa 53924448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 7402978 - 7403045
Alignment:
Q  21 caaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattag 88  Q
    ||||||||  || |||||||||||||||||||| |||| | | ||||||||||| |||| ||||||||    
T  7402978 caaattagtttccgactctattaatattttaaattagtctctttctttatcaaatgtttttcaattag 7403045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 13119442 - 13119375
Alignment:
Q  20 tcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||||||||  | ||||||||||||||||| ||||||||   ||||||| | ||||||||||||||||    
T  13119442 tcaaattagtttatgactctattaatatttcaaaatagtccctgtctttgttaaaagtttctcaatta 13119375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 55264427 - 55264482
Alignment:
Q  32 ctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||||||||||||||||| ||||||||   ||||||| |||||||||| |||||||    
T  55264427 ctgactctattaatatttcaaaatagtcattgtctttgtcaaaagtttttcaatta 55264482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 40942723 - 40942669
Alignment:
Q  33 tgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    ||||| ||||||||||||||| |||| | ||| ||| ||||||||||||||||||    
T  40942723 tgactatattaatattttaaattagtctttgtttttgtcaaaagtttctcaatta 40942669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 44137530 - 44137429
Alignment:
Q  70 tcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaata 168  Q
    ||||||||||||||||||||   |||  ||||||||||| ||||| || |||| |||||||||| ||| ||| |||||| ||||  ||||||| ||||||    
T  44137530 tcaaaagtttctcaattagacttatgtttctatgttttt-tcacacgatgagagacttaattgataaatttttgacaaagacagatactattttgaaata 44137432  T
Q  169 tta 171  Q
    |||    
T  44137431 tta 44137429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 39051239 - 39051284
Alignment:
Q  42 taatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||||||| |||||||| | |||||| |||||||||||||||||||    
T  39051239 taatatttcaaaatagtctctgtcttgatcaaaagtttctcaatta 39051284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 44137532 - 44137573
Alignment:
Q  43 aatattttaaaatagtttatgtctttatcaaaagtttctcaa 84  Q
    ||||||| ||||||||||||| |||| |||||||||||||||    
T  44137532 aatatttcaaaatagtttatgcctttgtcaaaagtttctcaa 44137573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 49448298 - 49448246
Alignment:
Q  39 tattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatc 91  Q
    ||||||||||| ||| |||| | ||||||| |||||||||| |||||||||||    
T  49448298 tattaatatttcaaactagtctttgtctttgtcaaaagtttatcaattagatc 49448246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 55264505 - 55264437
Alignment:
Q  103 tttttgtcacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaatatta 171  Q
    ||||||||||||||  ||| | |||||||| ||||||| |||||| |||  |||||||| |||||||||    
T  55264505 tttttgtcacatgataagagatttaattgaaaaacttttgacaaagacaatgactattttgaaatatta 55264437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 55264542 - 55264586
Alignment:
Q  43 aatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    ||||||| ||||||||  |||||||| ||||||||||||||||||    
T  55264542 aatatttcaaaatagtcaatgtctttgtcaaaagtttctcaatta 55264586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 56087832 - 56087764
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagttt 79  Q
    |||||||| | |||||||  |||||||||||| |||||| ||| || || |||||||| ||||||||||    
T  56087832 aagtcattttaaaattagtctctgactctattgatatttcaaactaattcatgtctttgtcaaaagttt 56087764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 243
Target Start/End: Complemental strand, 39643299 - 39643089
Alignment:
Q  34 gactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattga 132  Q
    ||||| |||||||||| ||||||||   ||| ||| |||||||||| ||||||||||  ||| |||||||||||||||||||||||| || |||||| ||    
T  39643299 gactccattaatatttcaaaatagtcattgtttttgtcaaaagtttttcaattagatttatgtctctatgtttttgtcacatgacgatacgcttaatcga 39643200  T
Q  133 caaactttggacaaaaacagcgactatttcgaaatattatcaaaagtttttcaattagttatgggtctctatgtttttgtcacatgatgagagatttagt 232  Q
     ||||||| |||| | |||   ||||||| ||||||||||||||| ||| |||||||  | |  ||||||||||||||||||||||| || ||| ||| |    
T  39643199 gaaacttttgacagagacatatactattttgaaatattatcaaaaatttctcaattaaatctccgtctctatgtttttgtcacatgacgaaagacttaat 39643100  T
Q  233 tgagaaacttt 243  Q
    ||| |||||||    
T  39643099 tgataaacttt 39643089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 190
Target Start/End: Original strand, 9900231 - 9900387
Alignment:
Q  35 actctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgac 133  Q
    |||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||  ||  ||||||||||||||||||| | ||  | ||||||||     
T  9900231 actctattaatattttaaaataatttttatctttgtcaaaagtttctcaattagatctttgtatctatgtttttgtcacatgtcaagggatttaattgag 9900330  T
Q  134 aaactttggacaaaaacagcgactatttcgaaatattatcaaaagtttttcaattag 190  Q
    ||| ||| ||||||||||   ||||||| || ||||| || ||||||| || |||||    
T  9900331 aaatttttgacaaaaacatgaactattttgagatattgtccaaagtttctcgattag 9900387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 146
Target Start/End: Original strand, 8285057 - 8285171
Alignment:
Q  33 tgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattg 131  Q
    ||||||||||||||||||||||||  || ||||||| ||||||||||||||||||  ||||||  |||||||||| |||||||||  | ||| |||||||    
T  8285057 tgactctattaatattttaaaataagttctgtctttgtcaaaagtttctcaattaagtccatgtgtctatgttttagtcacatgatcaaacagttaattg 8285156  T
Q  132 acaaactttggacaa 146  Q
    | ||||||| |||||    
T  8285157 agaaacttttgacaa 8285171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 8839957 - 8840059
Alignment:
Q  70 tcaaaagtttctcaattagatccatgct-ctatgtttttgtcacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaata 168  Q
    |||||||||||||||||| ||||||| | |||||||||| |||||||| |||| | || ||||| ||||||| |||||| |||| |||||||| ||||||    
T  8839957 tcaaaagtttctcaattaaatccatgattctatgtttttttcacatgaggagagatttgattgaaaaacttttgacaaagacagggactattttgaaata 8840056  T
Q  169 tta 171  Q
    |||    
T  8840057 tta 8840059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 8285303 - 8285232
Alignment:
Q  16 attctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||||||||||||   |||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  8285303 attctcaaattagtccctgactatattaatattttaaaatagtctatatctttgtcaaaagtttctcaatta 8285232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 171
Target Start/End: Original strand, 31051111 - 31051241
Alignment:
Q  43 aatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccat-gctctatgtttttgtcacatgacgagacacttaattga-caaacttt 140  Q
    |||||||  ||||||| ||||||||| ||||||||||||| |||| | ||||   ||||||||||| || |||||||||| ||||||||||  |||||||    
T  31051111 aatatttctaaatagtctatgtctttgtcaaaagtttctccattaaacccatatttctatgtttttttcgcatgacgagagacttaattgagaaaacttt 31051210  T
Q  141 ggacaaaaacagcgactatttcgaaatatta 171  Q
     ||||||| ||| ||||||||  ||||||||    
T  31051211 tgacaaaagcagagactattttaaaatatta 31051241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 31046211 - 31046134
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaag-tttctcaatta 87  Q
    |||| |||||||||||| | || ||||||||||||||||||||||||| |||| |||| ||||||| |||||||||||    
T  31046211 aagtgattctcaaattatcctccgactctattaatattttaaaatagtctatgcctttgtcaaaagttttctcaatta 31046134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 31066152 - 31066075
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaa-gtttctcaatta 87  Q
    |||| ||||| ||||||||  | ||||||||||||||||||||||||| | ||||||||||||||  |||||||||||    
T  31066152 aagtgattcttaaattagcccccgactctattaatattttaaaatagtctctgtctttatcaaaatttttctcaatta 31066075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 190
Target Start/End: Complemental strand, 36184725 - 36184640
Alignment:
Q  105 tttgtcacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaatattatcaaaagtttttcaattag 190  Q
    ||||||||||||||||||||||||| || ||||||| |||||| ||    |||| || |||||||||||||| |||| ||||||||    
T  36184725 tttgtcacatgacgagacacttaatcgagaaacttttgacaaagacgaatactactttgaaatattatcaaaggtttctcaattag 36184640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 27354461 - 27354409
Alignment:
Q  42 taatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccat 94  Q
    |||||||| |||||||||| ||||||| |||||||||| ||||||||||||||    
T  27354461 taatatttgaaaatagtttttgtctttgtcaaaagtttatcaattagatccat 27354409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 39643049 - 39643103
Alignment:
Q  33 tgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||||||||||||||||||||||  ||  |||||||||||||||||| |||||||    
T  39643049 tgactctattaatattttaaaatgcttcttgtctttatcaaaagtttatcaatta 39643103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 11275855 - 11275790
Alignment:
Q  14 tcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagttt 79  Q
    |||||||||||||||  ||||||| ||||||||||||||| |||||| | | ||| ||||||||||    
T  11275855 tcattctcaaattagtctctgactttattaatattttaaattagtttctatatttgtcaaaagttt 11275790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 33676672 - 33676768
Alignment:
Q  125 ttaattgacaaactttggacaaaaacagcgactatttcgaaatattatcaaaagtttttcaattagttatgggtctctatgtttttgtcacatgatga 222  Q
    |||||||| |||||||  ||||||| || ||||||||  |||||| ||||||||| ||| |||||  | |  ||||||||||||||||||||||||||    
T  33676672 ttaattgagaaacttttaacaaaaatagagactattttaaaatat-atcaaaagtattttaattaaatctctgtctctatgtttttgtcacatgatga 33676768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 5971961 - 5971885
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||||||| ||| |||||  || |||||||||||||||||||| ||||   ||||||| |||||| |||||||||||    
T  5971961 aagtcattttcagattagtctcagactctattaatattttaaactagtcattgtctttgtcaaaactttctcaatta 5971885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 31065879 - 31065931
Alignment:
Q  35 actctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    ||||||||||||||| ||||||||   ||||||| ||||||||||||||||||    
T  31065879 actctattaatatttcaaaatagtcattgtctttgtcaaaagtttctcaatta 31065931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 12640159 - 12640241
Alignment:
Q  79 tctcaattagatccatgc-tctatgtttttgtcacatgacgagacacttaattgacaaactttggacaaaaacagcgactattt 161  Q
    ||||||||||| |||||  ||||||||||| ||||||||||||  |||||||||| ||||||| ||||||| ||  ||||||||    
T  12640159 tctcaattagacccatgtatctatgttttt-tcacatgacgagggacttaattgaaaaacttttgacaaaatcaaagactattt 12640241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 27354459 - 27354560
Alignment:
Q  67 ttatcaaaagtttctcaattagatccatgctctatgtttttgtcacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaa 166  Q
    |||| |||||||| ||||||||| ||||| ||||||||||| |||||||| |||  |||||||| | |||| || || ||| | || |||||||| ||||    
T  27354459 ttatgaaaagtttatcaattagacccatggtctatgttttt-tcacatgaagagtgacttaattaagaaacatttgataaagagagagactattttgaaa 27354557  T
Q  167 tat 169  Q
    |||    
T  27354558 tat 27354560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 31046050 - 31046140
Alignment:
Q  43 aatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatgct-ctatgtttttgtcacatgacgagacacttaattga 132  Q
    |||||||  ||||||| |||||||||  |||||||||||| |||| |  |||| | |||||||||| || |||||||||| ||||||||||    
T  31046050 aatatttctaaatagtctatgtctttgccaaaagtttctccattaaacgcatgtttctatgtttttttcgcatgacgagagacttaattga 31046140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 36184799 - 36184729
Alignment:
Q  18 tctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattag 88  Q
    |||||||||||  ||| ||||||||| ||||| ||||||||   ||||||| |||||||||| ||||||||    
T  36184799 tctcaaattagtctctaactctattagtatttcaaaatagtcactgtctttgtcaaaagtttttcaattag 36184729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 1189371 - 1189424
Alignment:
Q  34 gactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||||||||||||||| ||| || ||||| ||||| |||||||||| |||||||    
T  1189371 gactctattaatatttcaaactaatttatatctttgtcaaaagtttttcaatta 1189424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 11275695 - 11275748
Alignment:
Q  39 tattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatcc 92  Q
    |||||||||||| || |||| | ||||||| ||||||||||||||||| |||||    
T  11275695 tattaatattttcaactagtctttgtctttgtcaaaagtttctcaatttgatcc 11275748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 31051156 - 31051091
Alignment:
Q  125 ttaattgacaaactttggacaaaaacagcgactatttcgaaatattatcaaaagtttttcaattag 190  Q
    ||||| || ||||||| |||||| |||  |||||||| |||||||| ||||| |||||||||||||    
T  31051156 ttaatggagaaacttttgacaaagacatagactatttagaaatattgtcaaatgtttttcaattag 31051091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 31051272 - 31051195
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaag-tttctcaatta 87  Q
    |||| ||||||||||||||  | ||||||| ||||||||||||||||| | ||  ||| ||||||| |||||||||||    
T  31051272 aagtgattctcaaattagcccccgactctactaatattttaaaatagtctctgcttttgtcaaaagttttctcaatta 31051195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 9637791 - 9637747
Alignment:
Q  45 tattttaaaatagtttatgtctttatcaaaagtttctcaattaga 89  Q
    ||||||||||| ||  |||||||| ||||||||||||||||||||    
T  9637791 tattttaaaatggtcaatgtctttgtcaaaagtttctcaattaga 9637747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 31050996 - 31051052
Alignment:
Q  31 tctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||||||||| |||||||| ||||||||    |||||| ||||||||||||||||||    
T  31050996 tctgactctactaatatttcaaaatagtcctcgtctttgtcaaaagtttctcaatta 31051052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 243
Target Start/End: Original strand, 845021 - 845233
Alignment:
Q  35 actctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgac 133  Q
    ||||||||||||||| ||||||||   ||||||| ||||| ||||||||||| ||||  || ||||||||||||||||||||| |||||||||||||||     
T  845021 actctattaatatttcaaaatagtccttgtctttgtcaaatgtttctcaattggatctttgtctctatgtttttgtcacatgatgagacacttaattgag 845120  T
Q  134 aaactttggacaaaaacagcgactatttcgaaatattatcaaaagtttttcaattagttatgggtctcta---tgtttttgtcacatgatgagagattta 230  Q
    ||||||  |||||| |||   | ||||| ||||||||||||||||||| |||||||  |||  ||||| |   ||||||||||||| || ||||||||||    
T  845121 aaacttctgacaaagacaaatattattttgaaatattatcaaaagtttctcaattaaatatttgtctccatgttgtttttgtcacacgaagagagattta 845220  T
Q  231 gttgagaaacttt 243  Q
     | || |||||||    
T  845221 atagaaaaacttt 845233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 7790480 - 7790404
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattag 88  Q
    ||||||||||||||||||  | ||||||||||||||||| ||| |||||| | |||||||||||||||||||||||||    
T  7790480 aagtcattctcaaattagt-tatgactctattaatatttcaaattagtttctatctttatcaaaagtttctcaattag 7790404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 1818453 - 1818377
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||| ||||    
T  1818453 aagtgattctcaaattaatatctgactctattaatattttaaaatagtttctgtttttattaaatgtttctcgatta 1818377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 38783923 - 38784017
Alignment:
Q  33 tgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacactt 126  Q
    ||||||||||||||||||||||||||   ||||||| |||||||||||| |||||||||  || |||| | ||||||||||| ||| ||||||||    
T  38783923 tgactctattaatattttaaaatagtcattgtctttgtcaaaagtttcttaattagatcattgtctctgtatttttgtcacacgacaagacactt 38784017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 190
Target Start/End: Complemental strand, 15395471 - 15395319
Alignment:
Q  39 tattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatc-catgctctatgtttttgtcacatgacgagacacttaattgacaaac 137  Q
    |||||||||||||||||||||  ||| ||| |||||||||| |||||||| || |   |||||||||||||| ||||  ||| |||||||||||| ||||    
T  15395471 tattaatattttaaaatagttactgtttttgtcaaaagtttttcaattaggtctccgtctctatgtttttgttacatagcgaaacacttaattgagaaac 15395372  T
Q  138 tttggacaaaaacagcgactatttcgaaatattatcaaaagtttttcaattag 190  Q
    ||| || ||| |||   |||| || |||||||| |||||  ||| ||||||||    
T  15395371 ttttgataaagacatgaactactttgaaatattgtcaaatttttctcaattag 15395319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 27293292 - 27293396
Alignment:
Q  14 tcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcac 112  Q
    |||||||||||||||  ||||||||||||||||||| ||| |||||  | |||||  |||||||||||||||||| ||  || || ||||||||||| ||    
T  27293292 tcattctcaaattagtctctgactctattaatatttcaaattagttcttatctttgccaaaagtttctcaattaggtctttgtctttatgtttttgtaac 27293391  T
Q  113 atgac 117  Q
    |||||    
T  27293392 atgac 27293396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 40649946 - 40649848
Alignment:
Q  43 aatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatgct-ctatgtttttgtcacatgacgagacacttaattgacaaacttt 140  Q
    ||||||| ||||||||   ||||||| |||||||||||| |||||||  |||| | |||||||||| ||||||||||||  |||||||||| |||||||    
T  40649946 aatatttcaaaatagtcattgtctttgtcaaaagtttcttaattagactcatgtttctatgtttttttcacatgacgagggacttaattgagaaacttt 40649848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 46410758 - 46410685
Alignment:
Q  98 ctatgtttttgtcacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaatatta 171  Q
    |||||||||| ||||||||||||| ||||||| || ||||||| |||||| || | |||||||| |||||||||    
T  46410758 ctatgtttttttcacatgacgagagacttaatcgaaaaacttttgacaaagactgagactattttgaaatatta 46410685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 15395207 - 15395278
Alignment:
Q  16 attctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||||||||||||  | |||||||||||||||||||||||||| | ||||||| | ||||  ||||||||||    
T  15395207 attctcaaattagtctatgactctattaatattttaaaatagtctctgtctttgttaaaaaattctcaatta 15395278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 10595547 - 10595411
Alignment:
Q  35 actctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatcca-tgctctatgtttttgtcacatgacgagacacttaattgac 133  Q
    ||||||||||||||| ||| ||||   ||||||| |||||||||||||||| || || | | || |||| ||||||||||||||||   || |||||||     
T  10595547 actctattaatatttcaaattagtcattgtctttgtcaaaagtttctcaataaggtctatttctttatg-ttttgtcacatgacgaaggacctaattgag 10595449  T
Q  134 aaactttggacaaaaacagcgactatttcgaaatatta 171  Q
    ||||||| ||||| ||||  ||||| || |||||||||    
T  10595448 aaacttttgacaataacaaagactagtttgaaatatta 10595411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 15395339 - 15395383
Alignment:
Q  43 aatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    ||||||| ||| ||||| |||||||||||||||||||||||||||    
T  15395339 aatatttcaaagtagttcatgtctttatcaaaagtttctcaatta 15395383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 6061804 - 6061769
Alignment:
Q  154 gactatttcgaaatattatcaaaagtttttcaatta 189  Q
    |||||||| |||||||||||||||||||||||||||    
T  6061804 gactattttgaaatattatcaaaagtttttcaatta 6061769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 46410893 - 46410826
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtt 78  Q
    |||| |||||||| ||||  | |||||||| |||||||| |||||||| | |||||||||||||||||    
T  46410893 aagtgattctcaatttagtctatgactctaataatatttcaaaatagtctctgtctttatcaaaagtt 46410826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 171
Target Start/End: Original strand, 17347145 - 17347273
Alignment:
Q  42 taatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaaacttt 140  Q
    |||||||  |||||||||||||||||| |  ||||||||||||||| |  ||||  | ||||||||| |||||||| |||| |||||||||| | | |||    
T  17347145 taatattacaaaatagtttatgtctttgt-taaagtttctcaattaaactcatgtttttatgttttt-tcacatgatgagagacttaattgagagatttt 17347242  T
Q  141 ggacaaaaacagcgactatttcgaaatatta 171  Q
     |||||| |||| || ||||| |||||||||    
T  17347243 tgacaaagacagagattattttgaaatatta 17347273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 7790300 - 7790357
Alignment:
Q  22 aaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagttt 79  Q
    |||||||  ||||||| ||||||||||||||| || ||| ||||||| ||||||||||    
T  7790300 aaattagtttctgactttattaatattttaaattaatttttgtctttgtcaaaagttt 7790357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 10377616 - 10377539
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattag 88  Q
    |||||||| |||||||||  | ||||||||||||||||| ||| ||||  |||| | | |||||| ||||||||||||    
T  10377616 aagtcattatcaaattagtctttgactctattaatatttcaaattagtccatgtttgtgtcaaaattttctcaattag 10377539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 23399694 - 23399758
Alignment:
Q  67 ttatcaaaagtttctcaattagatccatgctctatgtttttgtcacatgacgagacacttaattga 132  Q
    |||||||||||||| |||||||| |  | ||||||||||||||||||||||||   ||||||||||    
T  23399694 ttatcaaaagtttcacaattagacctct-ctctatgtttttgtcacatgacgattgacttaattga 23399758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 38576586 - 38576659
Alignment:
Q  14 tcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||||||||||||||  | ||| ||||||||||||| |||  ||| | ||||||||||||||| || |||||||    
T  38576586 tcattctcaaattagtctttgattctattaatatttcaaaccagtctctgtctttatcaaaagattttcaatta 38576659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 28504720 - 28504784
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaa 75  Q
    ||||||||||||||||||  | ||||||||||||||||| ||| |||| | ||| ||| ||||||    
T  28504720 aagtcattctcaaattagtctatgactctattaatatttcaaactagtctctgtttttgtcaaaa 28504784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 38576765 - 38576693
Alignment:
Q  20 tcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatcc 92  Q
    ||||||||| |  ||||| ||||||||||  ||| |||| | |||||||||||||| ||||||||||| ||||    
T  38576765 tcaaattagtacttgactatattaatattacaaactagtctttgtctttatcaaaaatttctcaattaaatcc 38576693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 219
Target Start/End: Original strand, 81997 - 82175
Alignment:
Q  33 tgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatgctctatgtttttgtcacatgacgagacacttaattga 132  Q
    |||||||||||||||||  ||||| || || |||||  ||||||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||||||    
T  81997 tgactctattaatatttccaaataattcatatctttgccaaaagtttatcaattagatccat-ctctatgtttttatcacatgacaagacacttaattga 82095  T
Q  133 caaactttggacaaaaacagcgactatttcgaaatattatcaaaagtttttcaattagttatgggtctctatgtttttgtcacatga 219  Q
     ||||||| ||||||      |||||||| |||||||| |||||||||| |||||||| |    ||||| || ||||||||||||||    
T  82096 aaaacttt-gacaaa------gactattttgaaatattgtcaaaagtttctcaattagatcattgtctcaatttttttgtcacatga 82175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 161
Target Start/End: Original strand, 10910 - 11033
Alignment:
Q  39 tattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaaac 137  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||| ||  |||  ||||||||||| ||||| ||||||| |||||||||| ||||    
T  10910 tattaatattttaaaatagtttatatctttgtcaaaagtttctcaattaaatttatgtttctatgtttttttcacacgacgagagacttaattgaaaaac 11009  T
Q  138 tttggacaaaaacagcgactattt 161  Q
    ||| || ||| |||  ||||||||    
T  11010 ttttgataaagacaaagactattt 11033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 11046 - 10998
Alignment:
Q  39 tattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    ||||||||| |||||||||| | |||||||||||||||||| |||||||    
T  11046 tattaatatcttaaaatagtctttgtctttatcaaaagtttttcaatta 10998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 21394507 - 21394388
Alignment:
Q  64 tctttatcaaaagtttctcaattagatccatgctctatgtttttgtcacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcg 163  Q
    ||||| |||| |||||||||||||||||| | |||||||||||| ||||||||||||  |||||||||| |||||||  |||||      |||||||| |    
T  21394507 tctttgtcaatagtttctcaattagatcccttctctatgtttttatcacatgacgaggtacttaattgagaaacttttaacaaa------gactattttg 21394414  T
Q  164 aaatattatcaaaagtttttcaatta 189  Q
    ||||||| |||||||||| |||||||    
T  21394413 aaatattgtcaaaagtttctcaatta 21394388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 21969173 - 21969291
Alignment:
Q  32 ctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatgct-ctatgtttttgtcacatgacgagacacttaatt 130  Q
    |||||||||||||||||||||||||   | ||||||||||||||||||||||||||  |||||| | ||| |||||  ||||||||| ||| ||||||||    
T  21969173 ctgactctattaatattttaaaataaactctgtctttatcaaaagtttctcaattaagtccatgttgctaagttttattcacatgacaagaaacttaatt 21969272  T
Q  131 gacaaactttggacaaaaa 149  Q
    || | ||||| ||||||||    
T  21969273 gagagacttttgacaaaaa 21969291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 32520209 - 32520096
Alignment:
Q  35 actctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgac 133  Q
    |||||||||||||||||||||||| ||||| || ||||| ||||| ||||||| |||  |  || | | ||||||||||||||||||||||||||||||     
T  32520209 actctattaatattttaaaatagtctatgttttaatcaacagtttgtcaattaaatctttatctttgtatttttgtcacatgacgagacacttaattgaa 32520110  T
Q  134 aaactttggacaaa 147  Q
    ||||||| ||||||    
T  32520109 aaacttttgacaaa 32520096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 171
Target Start/End: Original strand, 26330227 - 26330355
Alignment:
Q  44 atattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaaactttgg 142  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||||||||  ||||||||||| ||||| | || || |||||||||| |||  || |    
T  26330227 atattttaaaatagtcaatgtctttgtcaaaagtttctcaattagatccatgtttctatgtttttttcacacggcgtgagacttaattgataaatctttg 26330326  T
Q  143 acaaaaacagcgactatttcgaaatatta 171  Q
    ||||| ||| | |||||||  ||||||||    
T  26330327 acaaagacaacaactattttaaaatatta 26330355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 17437776 - 17437677
Alignment:
Q  35 actctattaatattttaaaa-tagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattga 132  Q
    ||||||||||||||| |||| |||||| ||||||| | ||||||||||||||||||||  || ||||||||||||||||||| | |||  ||||||||||    
T  17437776 actctattaatatttcaaaaatagtttctgtctttgttaaaagtttctcaattagatctttgtctctatgtttttgtcacataaggagggacttaattga 17437677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 19122055 - 19121976
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagat 90  Q
    |||||| | |||||||||  | ||||||||||||||||| ||| |||||||||||||| | | |||||||||||||||||    
T  19122055 aagtcactttcaaattagtctatgactctattaatatttcaaactagtttatgtctttgttagaagtttctcaattagat 19121976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 5656462 - 5656536
Alignment:
Q  14 tcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattag 88  Q
    ||||| |||||||||| || |||| ||||||||||| ||| || |||||||||||||||||||||| ||| ||||    
T  5656462 tcattttcaaattagcctccgactatattaatatttcaaactaatttatgtctttatcaaaagtttttcatttag 5656536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 3890079 - 3890026
Alignment:
Q  35 actctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattag 88  Q
    |||||||||||||| |||| ||||| |||||||| |||||||||||||||||||    
T  3890079 actctattaatattctaaactagttcatgtctttgtcaaaagtttctcaattag 3890026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 32942442 - 32942389
Alignment:
Q  35 actctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattag 88  Q
    |||||||||||||||||| || || |||||||||||| ||||||||||||||||    
T  32942442 actctattaatattttaatatggtctatgtctttatcgaaagtttctcaattag 32942389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 21969337 - 21969268
Alignment:
Q  18 tctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||||||||||  |||||||| |||||||||||||||||| || | | ||| |||||||| |||||||||    
T  21969337 tctcaaattagtctctgactcaattaatattttaaaatagcttttatttttgtcaaaagtctctcaatta 21969268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 5656625 - 5656571
Alignment:
Q  34 gactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattag 88  Q
    |||| ||||||||||||||| |||| | ||||||| | |||||||||||||||||    
T  5656625 gactatattaatattttaaactagtctctgtctttgttaaaagtttctcaattag 5656571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 17437556 - 17437610
Alignment:
Q  33 tgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    ||||||||||||||| | ||  |||| | ||||||||||||||||||||||||||    
T  17437556 tgactctattaatatatcaatttagtctttgtctttatcaaaagtttctcaatta 17437610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 26330364 - 26330310
Alignment:
Q  33 tgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||||||||||||||||||||||||||  ||||||| |||||  ||| |||||||    
T  26330364 tgactctattaatattttaaaatagttgttgtctttgtcaaagatttatcaatta 26330310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 8592163 - 8592227
Alignment:
Q  154 gactatttcgaaatattatcaaaagtttttcaattagttatgggtctctatgtttttgtcacatga 219  Q
    |||||||| ||||||||| |||||||||||| ||||| | |  |||||||||||||||||| ||||    
T  8592163 gactattttgaaatattagcaaaagtttttcgattagatct-tgtctctatgtttttgtcatatga 8592227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 16710442 - 16710491
Alignment:
Q  9 tcaagtcattctcaaattagcatctgactctattaatattttaaaatagt 58  Q
    |||||||| | |||||||||  | ||||||||||||||||||||||||||    
T  16710442 tcaagtcactttcaaattagactttgactctattaatattttaaaatagt 16710491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 19121887 - 19121940
Alignment:
Q  35 actctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattag 88  Q
    ||||||||||||||||||| |||||| | ||||| ||||||| |||| ||||||    
T  19121887 actctattaatattttaaactagtttctatctttgtcaaaagcttctaaattag 19121940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 8446952 - 8447028
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||| ||| |||||||||   |||| ||||||||||||| ||||||||  |||||||| | |||||||| |||||||    
T  8446952 aagtgattttcaaattagtcactgattctattaatatttcaaaatagtcaatgtctttgttaaaagtttttcaatta 8447028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 8455756 - 8455832
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||| ||| |||||||||   |||| ||||||||||||| ||||||||  |||||||| | |||||||| |||||||    
T  8455756 aagtgattttcaaattagtcactgattctattaatatttcaaaatagtcaatgtctttgttaaaagtttttcaatta 8455832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 8592182 - 8592258
Alignment:
Q  71 caaaagtttctcaattagatccatgctctatgtttttgtcacatgacgagacacttaattgacaaactttggacaaa 147  Q
    ||||||||| || ||||||||    |||||||||||||||| |||||||   |||||||||| ||||||| ||||||    
T  8592182 caaaagtttttcgattagatcttgtctctatgtttttgtcatatgacgatggacttaattgaaaaacttttgacaaa 8592258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 17333449 - 17333413
Alignment:
Q  55 tagtttatgtctttatcaaaagtttctcaattagatc 91  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  17333449 tagtctatgtctttgtcaaaagtttctcaattagatc 17333413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 171
Target Start/End: Original strand, 12025 - 12152
Alignment:
Q  39 tattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatgctctatgtttttgtcacatgacgagacacttaattgacaaact 138  Q
    |||||||||||||||||||||| || ||||||||||||||||||| ||| ||     |||||| ||||||||||||||||| | |||||||||| |   |    
T  12025 tattaatattttaaaatagtttttgcctttatcaaaagtttctcagttaaat-----ctctatatttttgtcacatgacgaaagacttaattgaaatttt 12119  T
Q  139 ttggacaaaaacagcgactatttcgaaatatta 171  Q
    || |||||||| || ||||||||  ||||||||    
T  12120 tttgacaaaaatagtgactattttaaaatatta 12152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 14018 - 13902
Alignment:
Q  16 attctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatgctctatgtttttgtcacatg 115  Q
    ||||| ||||||| |||||||| ||||||||||| ||| || | |  ||||| ||||||| ||| |||||||| ||    || ||| |||||||||||||    
T  14018 attcttaaattagtatctgactttattaatatttcaaattaatctccgtcttcatcaaaattttatcaattaggtcatatctttatatttttgtcacatg 13919  T
Q  116 acgagacacttaattga 132  Q
    || ||  ||||||||||    
T  13918 actagggacttaattga 13902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 171
Target Start/End: Complemental strand, 42710086 - 42709957
Alignment:
Q  42 taatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaaacttt 140  Q
    |||||||| |||||||| || |||||| ||||||||||||||||||||  ||||  ||||||||||| ||| ||||||||  |||||||||| |||||||    
T  42710086 taatatttcaaaatagtctaagtctttgtcaaaagtttctcaattagactcatgtttctatgttttt-tcatatgacgagggacttaattgagaaacttt 42709988  T
Q  141 ggacaaaaacagcgactatttcgaaatatta 171  Q
     |||||| |||  ||||||||  ||||||||    
T  42709987 tgacaaagacattgactattttaaaatatta 42709957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 12427842 - 12428003
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgt 109  Q
    ||||||||||||||||||    ||||||||||||||||||||| ||||   | |||||  ||||| ||||||| |||| ||  || || |||||||||||    
T  12427842 aagtcattctcaaattagttcatgactctattaatattttaaattagtcattatctttgccaaaaatttctcatttaggtcattgtctttatgtttttgt 12427941  T
Q  110 cacatgacgagacacttaattgacaaactttggacaaaaacagcgactatttcgaaatatta 171  Q
    |||||||||||| ||  |||||| ||||||| |||||| |||  ||||| || |||||||||    
T  12427942 cacatgacgagagaccaaattgaaaaacttttgacaaagacatggactagtttgaaatatta 12428003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 42709926 - 42710002
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||| |||||||||| ||  || |||||||||||||||||||||||||  |||||||| ||||||||||||||||||    
T  42709926 aagtgattctcaaatcagtctccgactctattaatattttaaaatagtcaatgtctttgtcaaaagtttctcaatta 42710002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 30935217 - 30935327
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccat-gctctatgtttttgt 109  Q
    |||||||||| |||||||  |  |||||||||||||||| ||| ||||| || ||||| |||||||||| ||| |||||||| |  || |||||||||||    
T  30935217 aagtcattcttaaattagttttagactctattaatatttcaaactagttcatatctttgtcaaaagtttttcacttagatccttatctttatgtttttgt 30935316  T
Q  110 cacatgacgag 120  Q
    |||||||||||    
T  30935317 cacatgacgag 30935327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 10524929 - 10525058
Alignment:
Q  16 attctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacat 114  Q
    |||||||||||||  | ||||| ||||||||||  ||| |||| |||||  || ||||||||||||||||||||||| |  || ||||||||||||||||    
T  10524929 attctcaaattagtct-tgactttattaatattacaaattagtctatgt--ttgtcaaaagtttctcaattagatccctatctttatgtttttgtcacat 10525025  T
Q  115 gacgagacacttaattgacaaactttggacaaa 147  Q
    ||||||  || ||||||| ||||||| ||||||    
T  10525026 gacgagggacctaattgagaaacttttgacaaa 10525058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 41008992 - 41008915
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattag 88  Q
    |||||||| ||||||||   |||||||||||||||||||||||||||| | | ||||| | |||||||||||||||||    
T  41008992 aagtcattttcaaattaatctctgactctattaatattttaaaatagtctctatctttgttaaaagtttctcaattag 41008915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 30165213 - 30165280
Alignment:
Q  20 tcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    ||||||||| || ||||| ||||||||||| |||||||||||| ||||| ||||||||| ||||||||    
T  30165213 tcaaattagtatttgactttattaatatttgaaaatagtttatatctttgtcaaaagttgctcaatta 30165280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 32296474 - 32296393
Alignment:
Q  33 tgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcaca 113  Q
    |||||||| ||||||||||||| | | ||| ||||| |||||||||| |||||||||||  || ||||||||||||||||||    
T  32296474 tgactctagtaatattttaaaacaatctatatctttgtcaaaagtttttcaattagatcattgtctctatgtttttgtcaca 32296393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 3248336 - 3248404
Alignment:
Q  18 tctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatt 86  Q
    ||||||||||| |||||||| ||||||||| | |||||||||| ||||||| ||||| |||||| ||||    
T  3248336 tctcaaattagtatctgactttattaatatctcaaaatagtttctgtctttgtcaaatgtttcttaatt 3248404  T

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Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 33384104 - 33384156
Alignment:
Q  35 actctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||||||||||||||||||||||| ||||||||  | ||||||||||||||||    
T  33384104 actctattaatattttaaaatagtctatgtcttcgttaaaagtttctcaatta 33384156  T

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Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 35661011 - 35660915
Alignment:
Q  37 tctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatc-catgctctatgtttttgtcacatgacgagacacttaattga 132  Q
    ||||||||||||| ||| |||||  ||||||| | |||||||||||||||||||| |    | ||||||||||||||||||||||| || |||||||    
T  35661011 tctattaatatttcaaattagttcttgtctttgttaaaagtttctcaattagatcgctctttttatgtttttgtcacatgacgagagacctaattga 35660915  T

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Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 41008803 - 41008867
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaa 75  Q
    |||||||||||||| |||  | ||| ||||||||||||||||||||||||  |||||||||||||    
T  41008803 aagtcattctcaaactagtctgtgattctattaatattttaaaatagtttccgtctttatcaaaa 41008867  T

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Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 16953218 - 16953305
Alignment:
Q  53 aatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgacaaactt 139  Q
    |||||| | ||||||| |||||||||| |||||||||| |||| || ||||||||||| |||||||||   |||||||||| ||||||    
T  16953218 aatagtatctgtctttgtcaaaagtttgtcaattagattcatgtctttatgtttttgttacatgacgatggacttaattgagaaactt 16953305  T

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Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 32296437 - 32296366
Alignment:
Q  172 tcaaaagtttttcaattagttatgggtctctatgtttttgtcacatgatgagagatttagttgagaaacttt 243  Q
    ||||||||||||||||||| |    |||||||||||||||||||| |||||  |||||| ||||||||||||    
T  32296437 tcaaaagtttttcaattagatcattgtctctatgtttttgtcacacgatgaatgatttaattgagaaacttt 32296366  T

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Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 26752084 - 26752010
Alignment:
Q  12 agtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatt 86  Q
    ||||| |||||||||||  ||||||| | ||| |||||||||||||| | ||||||| |||||||||| ||||||    
T  26752084 agtcactctcaaattagtctctgactttgttattattttaaaatagtctttgtctttgtcaaaagtttttcaatt 26752010  T

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Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 42710041 - 42710105
Alignment:
Q  126 taattgacaaactttggacaaaaacagcgactatttcgaaatattatcaaaagtttttcaattag 190  Q
    ||||||| ||||||| |||||| ||   |||||||| ||||||||||||||||||| ||||||||    
T  42710041 taattgagaaacttttgacaaagacttagactattttgaaatattatcaaaagtttctcaattag 42710105  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 33384210 - 33384142
Alignment:
Q  72 aaaagtttctcaattagatccatgctctatgtttttgtcacatgacgagacacttaattgacaaacttt 140  Q
    ||||||||||| ||||||| |||| | ||||||||| |||||||| ||   |||||||||| |||||||    
T  33384210 aaaagtttctcgattagattcatgttttatgtttttatcacatgatgaatgacttaattgagaaacttt 33384142  T

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Target: scaffold0528 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 171
Target Start/End: Complemental strand, 1830 - 1700
Alignment:
Q  43 aatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccat-gctctatgtttttgtcacatgacgagacacttaattga-caaacttt 140  Q
    |||||||  ||||||| ||||||||| ||||||||||||| |||| | ||||   ||||||||||| || |||||||||| ||||||||||  |||||||    
T  1830 aatatttctaaatagtctatgtctttgtcaaaagtttctccattaaacccatatttctatgtttttttcgcatgacgagagacttaattgagaaaacttt 1731  T
Q  141 ggacaaaaacagcgactatttcgaaatatta 171  Q
     ||||||| ||| ||||||||  ||||||||    
T  1730 tgacaaaagcagagactattttaaaatatta 1700  T

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Target: scaffold0528; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 1669 - 1746
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaag-tttctcaatta 87  Q
    |||| ||||||||||||||  | ||||||| ||||||||||||||||| | ||  ||| ||||||| |||||||||||    
T  1669 aagtgattctcaaattagcccccgactctactaatattttaaaatagtctctgcttttgtcaaaagttttctcaatta 1746  T

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Target: scaffold0528; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 1785 - 1850
Alignment:
Q  125 ttaattgacaaactttggacaaaaacagcgactatttcgaaatattatcaaaagtttttcaattag 190  Q
    ||||| || ||||||| |||||| |||  |||||||| |||||||| ||||| |||||||||||||    
T  1785 ttaatggagaaacttttgacaaagacatagactatttagaaatattgtcaaatgtttttcaattag 1850  T

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Target: scaffold0528; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 1945 - 1889
Alignment:
Q  31 tctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||||||||| |||||||| ||||||||    |||||| ||||||||||||||||||    
T  1945 tctgactctactaatatttcaaaatagtcctcgtctttgtcaaaagtttctcaatta 1889  T

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Target: scaffold0198 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 12219 - 12113
Alignment:
Q  35 actctattaatattttaaaatagtttatgtctttatcaaaagtttctcaattagatccatg-ctctatgtttttgtcacatgacgagacacttaattgac 133  Q
    |||| ||||||||||||||||||| | |||| |||||||| |||| |||||||||| ||||  |||||||||||||||| |||   |||| ||||||||     
T  12219 actcgattaatattttaaaatagtctttgtccttatcaaacgtttttcaattagattcatgtatctatgtttttgtcacgtgatatgacatttaattgaa 12120  T
Q  134 aaacttt 140  Q
    |||||||    
T  12119 aaacttt 12113  T

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Target: scaffold0154 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 6290 - 6214
Alignment:
Q  11 aagtcattctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatta 87  Q
    |||| |||||||||||||  | ||||||||||||||||| |||||||||| || |||| | ||||||||||||||||    
T  6290 aagttattctcaaattagtctttgactctattaatatttcaaaatagtttttgcctttgttaaaagtttctcaatta 6214  T

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Target: scaffold0154; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 6127 - 6064
Alignment:
Q  70 tcaaaagtttctcaattagatccatgct-ctatgtttttgtcacatgacgagacacttaattga 132  Q
    ||||||||||||||||||||  |||| | |||||||||| ||||||||||||  ||||||||||    
T  6127 tcaaaagtttctcaattagactcatgtttctatgtttttttcacatgacgagggacttaattga 6064  T

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Target: scaffold0022 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 122606 - 122547
Alignment:
Q  16 attctcaaattagcatctgactctattaatattttaaaatagtttatgtctttatcaaaa 75  Q
    |||||||||||||  ||||||||||||||||||| ||| |||| | ||||||| ||||||    
T  122606 attctcaaattagtctctgactctattaatatttcaaactagtctttgtctttgtcaaaa 122547  T

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Target: scaffold0022; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 62721 - 62773
Alignment:
Q  34 gactctattaatattttaaaatagtttatgtctttatcaaaagtttctcaatt 86  Q
    ||||||||| |||||||||| |||||  | ||||| |||||||||||||||||    
T  62721 gactctattgatattttaaattagttcttatctttgtcaaaagtttctcaatt 62773  T

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Target: scaffold0360 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 4838 - 4796
Alignment:
Q  16 attctcaaattagcatctgactctattaatattttaaaatagt 58  Q
    |||||||||||||  ||||| ||||||||||||||||||||||    
T  4838 attctcaaattagtctctgattctattaatattttaaaatagt 4796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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