View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_6 (Length: 450)
Name: NF1394_low_6
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 206 - 435
Target Start/End: Original strand, 43260846 - 43261075
Alignment:
| Q |
206 |
agaaaaaatgaataagttgttttaaaatgacgtggtatgttgagtccgcctaagccacacaaatattgaattgtactattagaggtgtttttacaagtta |
305 |
Q |
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| T |
43260846 |
agaaaaaatgaataagttgttttaaaatgacgtggtatgttgagcccgcttaagccacacaaatattgaattgtactattggaggtgtttttacaagtta |
43260945 |
T |
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| Q |
306 |
tcacttaaaagaaatattaataatttcatttacaaatatttaacttacaggcatacacaaacattttttgcgaatattaaatgcatttattaagataatt |
405 |
Q |
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| T |
43260946 |
tcacttaaaagaaatattaataatttcatttacaaatatttaacttacaggcatacacaaacattttttgcgaatattaaatgcaattattaagataatt |
43261045 |
T |
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| Q |
406 |
gaacatatgtatttcaaattttctattcat |
435 |
Q |
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| T |
43261046 |
gaacatatgtatttcaaattttctattcat |
43261075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 44532919 - 44533145
Alignment:
| Q |
13 |
atactataatagaataagttagttctattatgtcatcatgtctcttttcaaatatatataaagtttcatcattaattagaagagattgacgtgacaaaat |
112 |
Q |
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| T |
44532919 |
atactataatagaataagttagttcttttatgtcaccatgtctcttttcaaatatatataaagtttcatgattaattagaagagattgacgtgacaaaat |
44533018 |
T |
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| Q |
113 |
gtttctaggacgattgnnnnnnngaagcaactcatcttaacaatattttaaggaaactaagcgatatcatacgttcttaataatttgttcatt---agaa |
209 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | || |
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| T |
44533019 |
gtttctaggacgattg-ttttctgaagcaactcatcttaacaatattttaaggaaactaagcgacatcatacgttcttaataatttgttcattaaaaaaa |
44533117 |
T |
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| Q |
210 |
aaaatgaataagttgttttaaaatgacg |
237 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
44533118 |
aaaaagaataagttgttttaaaatgacg |
44533145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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