View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1394_low_60 (Length: 221)
Name: NF1394_low_60
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_60 |
 | |
|
| [»] scaffold0274 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 41430166 - 41430271
Alignment:
| Q |
1 |
tgggtttcacttttcaatcatgatcattatgtatgcctctgattttccagtttctgatttaaagttattaattttgctgatgcatattgttactactcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41430166 |
tgggtttcacttttcaatcatgatcattatgtatgcctctgattttccagtttctgatttaaagttattaattttgctgatgcatattgttactgctcct |
41430265 |
T |
|
| Q |
101 |
ttgttt |
106 |
Q |
| |
|
|||||| |
|
|
| T |
41430266 |
ttgttt |
41430271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 14716 - 14612
Alignment:
| Q |
1 |
tgggtttcacttttcaatcatgatcattatgtatgcctctgattttccagtttctgatttaaagttattaattttgctgatgcatattgttactactcct |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14716 |
tgggtttcactttt-aatcatgatcattatgtatgcctctgattttccagtttctgatttaaagttattaattttgctgatgcatattgttactgctcct |
14618 |
T |
|
| Q |
101 |
ttgttt |
106 |
Q |
| |
|
|||||| |
|
|
| T |
14617 |
ttgttt |
14612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 33368014 - 33368077
Alignment:
| Q |
5 |
tttcacttttcaatcatgatcattatgtatgcctctga--ttttccagtttctgatttaaagtt |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
33368014 |
tttcacttttcaatcatgatcattatgtatgcctctgattttttccaatttctgctttaaagtt |
33368077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 33360492 - 33360553
Alignment:
| Q |
5 |
tttcacttttcaatcatgatcattatgtatgcctctgattttccagtttctgatttaaagtt |
66 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
33360492 |
tttcacttttcaaccatgatcattatttatgcctctacttttccaatttctgctttaaagtt |
33360553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 33368111 - 33368171
Alignment:
| Q |
19 |
catgatcattatgtatg-cctctgattttccagtttctgatttaaagttattaattttgct |
78 |
Q |
| |
|
|||||||||||| |||| || |||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
33368111 |
catgatcattatttatgtcccctgattttccagtttctgctttaaagttattaactttgct |
33368171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University