View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_64 (Length: 216)
Name: NF1394_low_64
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_64 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: scaffold0361 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 11846 - 11774
Alignment:
| Q |
139 |
gaaattaagcgagtggatcatattcttgcttccttgcaacgcagggtgagttgatatattctttccatggttt |
211 |
Q |
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| T |
11846 |
gaaattaagcgagtggatcatattcttgcttccttgcaacgcaaggtgagttgatatattctttccatggttt |
11774 |
T |
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Target: chr8 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 4947174 - 4947102
Alignment:
| Q |
139 |
gaaattaagcgagtggatcatattcttgcttccttgcaacgcagggtgagttgatatattctttccatggttt |
211 |
Q |
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| T |
4947174 |
gaaattaagcgagtggatcatattcttgcttccttgcaacgcaaggtgagttgatatattctttccattgttt |
4947102 |
T |
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Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 31052684 - 31052604
Alignment:
| Q |
66 |
aataagataaaaattggcctaaatatatgttatattatatgctgtgaaatatatttcagaatcacatcaaattgaaattaa |
146 |
Q |
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| T |
31052684 |
aataagataaaatttggcctaaatatatgttatattatatgctatgaaatatacttcataatcacaccaaattgagattaa |
31052604 |
T |
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