View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1394_low_9 (Length: 442)
Name: NF1394_low_9
Description: NF1394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1394_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 30 - 225
Target Start/End: Complemental strand, 54473842 - 54473647
Alignment:
| Q |
30 |
catttgaccttccataaaacaaagagaaagcttcgcctgaattgggaagttgagagggtgggtagttggagagacagcggaggaaggttcttctgagaga |
129 |
Q |
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| T |
54473842 |
catttgaccttccataaaacaaagagaaagcttcgcctaaattgggaagttgagagggtgggtagttggagagacggcggaggaaggttcttcagagaga |
54473743 |
T |
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| Q |
130 |
tattcaatggaatcggcggtggagagaatgctagtttatgatcggggagagtgacaaaggggatgtcgagagcttaggtgttttggaaatactatg |
225 |
Q |
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| T |
54473742 |
tattcaatggaatcgacggtggagagaatgctagtttatgatcggggagagtgacaaaggggatgtcgagagcttaggtgttttggaaatactatg |
54473647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 317 - 442
Target Start/End: Complemental strand, 54473451 - 54473324
Alignment:
| Q |
317 |
tgaagcaaccaattgtggtttaaacatgggttgttgatgtggtttctagaaaaaccaaacacacacctagtgaatt--agtttcaaatatgtagcagtta |
414 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54473451 |
tgaagcaaccaattgtggcttaagcatgggttgttgatgtggtttctagaaaaaccaaacacacacctagtgaattagagtttcaaatatgtagcagtta |
54473352 |
T |
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| Q |
415 |
ccctttgcagagatacgtcggcatccat |
442 |
Q |
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| T |
54473351 |
ccctttgcagagatacatcggcatccat |
54473324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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