View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13950_low_2 (Length: 326)
Name: NF13950_low_2
Description: NF13950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13950_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 52856999 - 52856697
Alignment:
| Q |
11 |
cacagagaacttgatttggataatgcaacagcaaaaataaaatataatgtgggtgatatgttgaatttaccagagagcattttgcttctaatccagacca |
110 |
Q |
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| T |
52856999 |
cacagagaacttgatttggataatgcaacagcaaaaataaaatataatgtgggtgatatgttgaatttaccagagagcattttgcttctaatccagacca |
52856900 |
T |
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| Q |
111 |
agtgctagtgacaaagttttccacaagcaattcggggtcattatcatttacagtatctttggatagcaaattacatcacaatatgcggttaagcagcaaa |
210 |
Q |
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| T |
52856899 |
agtgctagtgacaaagttttccacaagcaattcggggtcattatcatttacagtatctttggatagcaaattacatcacaatacgcggttaagcagcaaa |
52856800 |
T |
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| Q |
211 |
aatcaaataataatggaaggaagctgtcctggcaaaaggatcccgccacaagtgaattcaagtgacgaaccaaagggaattcagttttctgcagttcttg |
310 |
Q |
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| T |
52856799 |
aatcaaataataatggaaggaagctgtcctggcaaaaggatcccgccacaagtgaattcaagtgacgaaccaaagggaattcagttttctgcagttcttg |
52856700 |
T |
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| Q |
311 |
atg |
313 |
Q |
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| T |
52856699 |
atg |
52856697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 23 - 312
Target Start/End: Complemental strand, 48487794 - 48487507
Alignment:
| Q |
23 |
gatttggataatgcaacagcaaaaataaaatataatgtgggtgatatgttgaatttaccagagagcattttgcttctaatccagaccaagtgctagtgac |
122 |
Q |
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| T |
48487794 |
gatttggatagtgctacagcaaaaataaagtacaatgtaggtgatata--gaatttaccagagagcattttgcttctaaaccggaccaagtgctagcgac |
48487697 |
T |
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| Q |
123 |
aaagttttccacaagcaattcggggtcattatcatttacagtatctttggatagcaaattacatcacaatatgcggttaagcagcaaaaatcaaataata |
222 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||||||| |||| ||||| || ||||||| |||||| |
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| T |
48487696 |
aaagttttccacaagcaagtcgggttcattatcatttacagtatctttggatagcgagttacatcacaattcgcgggtaagcggccaaaatcagataata |
48487597 |
T |
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| Q |
223 |
atggaaggaagctgtcctggcaaaaggatcccgccacaagtgaattcaagtgacgaaccaaagggaattcagttttctgcagttcttgat |
312 |
Q |
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| T |
48487596 |
atggaaggaagttgtcctggcaaaaggatcgcgccacaaatgaattcaagtggtgaacaaaaaggaattcagttttgtgcagttcttgat |
48487507 |
T |
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