View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13950_low_3 (Length: 269)
Name: NF13950_low_3
Description: NF13950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13950_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 6734786 - 6734529
Alignment:
| Q |
13 |
aaaatatacccaaaacaagttggacaaacaacaaaaaccagcaaacacaatcttgtctcattctcacataa-cacaaatgatgcaaaatttcacaatgca |
111 |
Q |
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| T |
6734786 |
aaaatatacccaaaacaagttggacaaacaacaaaaaccagcaaacacaatcttgtctcattctcacataaacacaaatgatgcaaaatttcacaatgca |
6734687 |
T |
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| Q |
112 |
gcctatatccttcctttcccagttccaagagtgagttccaaatcatccaatccctcatcatgaattttttcaccaacccaaggctttacttgcaccccaa |
211 |
Q |
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| T |
6734686 |
gcctatatccttcctttcccagttccaagagtgagttccaaatcatccaatccctcatcatgaattttttcaccaacccaaggctttacttgcaccccaa |
6734587 |
T |
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| Q |
212 |
gcatttttgaacttgtcgtctcgctgaatgagttatcagccacagcattgaaagatga |
269 |
Q |
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| T |
6734586 |
gcatttttgaacttgtcttctcgctgaatgagttatcagccacagcattgaaagatga |
6734529 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 52231344 - 52231267
Alignment:
| Q |
134 |
ttccaagagtgagttccaaatcatccaatccctcatcatgaattttttcaccaacccaaggctttacttgcaccccaa |
211 |
Q |
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|||||||||| || |||||||||||||| ||| | |||||||| |||| |||||||||||||| || |||||||||| |
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| T |
52231344 |
ttccaagagtaagctccaaatcatccaagcccacttcatgaatcctttccccaacccaaggcttgacctgcaccccaa |
52231267 |
T |
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