View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13950_low_4 (Length: 241)
Name: NF13950_low_4
Description: NF13950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13950_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 6734314 - 6734537
Alignment:
| Q |
18 |
caaacagtgctcctgttacacctcctctctactcaccaacatcaacaaaccttacaccaattccagcatgggactccatttccaaagaatctatggcctt |
117 |
Q |
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| T |
6734314 |
caaacagtgctcctgttacacctcctctctactcaccaacatcaacaaaccttacaccaattccagcatgggactccatttccaaagaatctatggcctt |
6734413 |
T |
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| Q |
118 |
ttttagttacccttttgttgcatcttctacccctgctagcccaacacaccaaaaccttcataccccaatgaagttccatccttttgcacaatctccattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6734414 |
ttttagttacccttttgttgcatcttctacccctgctagcccaacacaccaaaaccttcataccccaatgaagttccatccttttgcacaatctccattt |
6734513 |
T |
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| Q |
218 |
gcagtgccaacttcttcatctttc |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
6734514 |
gcagtgccaacttcttcatctttc |
6734537 |
T |
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