View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13951_high_4 (Length: 484)
Name: NF13951_high_4
Description: NF13951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13951_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 37575181 - 37574715
Alignment:
| Q |
1 |
tgtaagttgttacataaagcgaaaaaatcatatatgagagaggagacaaacctatt-aattgcaatcagttggctacatatgtggtgctagcatattaat |
99 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||| |||||||||||||| || |||||||| |||||||||||||||||| | |||||||||| |
|
|
| T |
37575181 |
tgtaagttgttacataaagcgaaaaa-tcaggtatgagag--gagacaaacctatttaactgcaatcacttggctacatatgtggtggtggcatattaat |
37575085 |
T |
|
| Q |
100 |
caaaagagatcctttccctaattgttgcacaaattgtttcgaggttgatctttgattggttcaataatttcttcgaatttattttaccaaaccaaatcac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37575084 |
caaaagagatcctttccctaattgttgcacaaattgtttcgaggttgatctttgattggttcaataatttcttcgaatttattttaccaaaccaaatcat |
37574985 |
T |
|
| Q |
200 |
actacttcttaattatacatatgtcttagatttgagtgtttgatttctctggagtgttagtataagtattttaaattggatgaaaattgatacactagac |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37574984 |
actacttcttaattatacatatgtcttagatttgagggtttgatttctctagagtcttagtataagtattttaaattggatgaaaattgatacactagac |
37574885 |
T |
|
| Q |
300 |
tggttaatggttattaatatatgcatgtaatgtttaaggaacatctgacagaaaatgtgtcggagtagtttgtcttgaaatggtagtggtaattaatatt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37574884 |
tggttaatggttattaatatatgcatgtaatgtttaaggaacatctgacagaaaatgtgtcggagtagtttgtcttgaaatggtagtggtaattaatatt |
37574785 |
T |
|
| Q |
400 |
aatatgtgcagtgcactagaacaaaaaacatatgaggcagtagtgatttataattgcaggtggttatggt |
469 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37574784 |
aatatgtgcagtgcagtagaacaaaaaacatatgaggcagtagtgatttataattgcaggtggttatggt |
37574715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 81 - 285
Target Start/End: Original strand, 32969707 - 32969926
Alignment:
| Q |
81 |
gtggtgctagcatattaatcaaaagagatcctttccctaattgttgcacaaat--tgtttcgaggttgatctt------------tgattggttcaataa |
166 |
Q |
| |
|
|||||| ||| |||| ||||||||||||| |||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
32969707 |
gtggtggtagtatatcaatcaaaagagattctttccctaattgttgtacaaatattgtttcgaggttgatcttggctattataattgattggttcaataa |
32969806 |
T |
|
| Q |
167 |
tttcttcgaatttattttaccaaaccaaatcacactacttcttaattatacatatgtcttaga-tttgagtgtttgatttctctggagtgttagtataag |
265 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| |||||||| |||||||||||||||| |||| |||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
32969807 |
tttcttcgaattaattctaccaaaccaaatcatactacttcataattatacatatgtcctagattttgagagtttaatttctctggagtgttattataag |
32969906 |
T |
|
| Q |
266 |
tattttaaattggatgaaaa |
285 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
32969907 |
taatttaaattggatgaaaa |
32969926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 151 - 295
Target Start/End: Original strand, 37167656 - 37167799
Alignment:
| Q |
151 |
ttgattggttcaataatttcttcgaatttattttaccaaaccaaatcacactacttcttaattatacatatgtcttaga-tttgagtgtttgatttctct |
249 |
Q |
| |
|
|||||||||||||| |||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||| |||||||| |
|
|
| T |
37167656 |
ttgattggttcaattattttttcgaattaattttaccaaaccaaatcatactacttcttaattatacatatgtcttagattttgagaatttaatttctct |
37167755 |
T |
|
| Q |
250 |
ggagtgttagtataagtattttaaattggatgaaaattgatacact |
295 |
Q |
| |
|
|||||| |||||||| |||||||||| ||||||||||||||| |
|
|
| T |
37167756 |
--cgtgttattataagtaatttaaattgggggaaaattgatacact |
37167799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 54683570 - 54683514
Alignment:
| Q |
153 |
gattggttcaataatttcttcgaatttattttaccaaaccaaatcacactacttctt |
209 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
54683570 |
gattggttcaataatttcttcgaattaattttaccaaaccaaatcatactacttctt |
54683514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 295
Target Start/End: Complemental strand, 54683499 - 54683398
Alignment:
| Q |
193 |
aaatcacactacttcttaattatacatatgtcttaga-tttgagtgtttgatttctctggagtgttagtataagtattttaaattggatgaaaattgata |
291 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||| |||||| ||| |||||||| |||||| ||||| || ||||||||||| ||||||||||| |
|
|
| T |
54683499 |
aaatcatactacttcttaattatacatatgtcctagattttgagaatttaatttctct--cgtgttattataaataatttaaattggaggaaaattgata |
54683402 |
T |
|
| Q |
292 |
cact |
295 |
Q |
| |
|
|||| |
|
|
| T |
54683401 |
cact |
54683398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University