View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13951_high_8 (Length: 291)

Name: NF13951_high_8
Description: NF13951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13951_high_8
NF13951_high_8
[»] chr7 (4 HSPs)
chr7 (12-291)||(14812310-14812591)
chr7 (12-291)||(15259305-15259586)
chr7 (12-131)||(14804890-14805009)
chr7 (12-131)||(15251884-15252003)
[»] chr5 (1 HSPs)
chr5 (12-291)||(17521589-17521870)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 14812310 - 14812591
Alignment:
Q  12 gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14812310 gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatat 14812409  T
Q  112 ccataaccattatctctaatagtgcaaatttgtatccacatattc--ttgagtttaacagcgagacttctctatatatcttcagatattgttttcccaaa 209  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14812410 ccataaccattatctctaatagtgcaaatttgtaaccacatactcttttgagtttaacagcgagacttctctctatatcttcagatattgttttcccaaa 14812509  T
Q  210 caaaagcctctttgcaaggtgcattttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccacc 291  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14812510 caaaagcctctttggaaggtgctttttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcatcacc 14812591  T

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Target: chr7; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 15259305 - 15259586
Alignment:
Q  12 gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat 111  Q
    |||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15259305 gaacctgtggtcagaacctgaaaatttagttttggatcatctccttgcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatat 15259404  T
Q  112 ccataaccattatctctaatagtgcaaatttgtatccacatattc--ttgagtttaacagcgagacttctctatatatcttcagatattgttttcccaaa 209  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||  |||||||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  15259405 ccataaccattatctctaatagtgcaaatttgtaaccacatactcttttgagtttaacagcgagatttctctctatatcttcagatattgtttttccaaa 15259504  T
Q  210 caaaagcctctttgcaaggtgcattttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccacc 291  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15259505 caaaagcctctttgtaaggtgctttttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcatcacc 15259586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 14804890 - 14805009
Alignment:
Q  12 gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat 111  Q
    ||||||||||||| ||| |||| | ||||||| |||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||    
T  14804890 gaacctgtggtcaaaacgtgaacacttagtttaggatcatcacttagctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtat 14804989  T
Q  112 ccataaccattatctctaat 131  Q
    |   ||||||| ||||||||    
T  14804990 cagcaaccattgtctctaat 14805009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 15251884 - 15252003
Alignment:
Q  12 gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat 111  Q
    ||||||||||||| ||| |||| | ||||||| |||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||    
T  15251884 gaacctgtggtcaaaacgtgaacacttagtttaggatcatcacttagctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtat 15251983  T
Q  112 ccataaccattatctctaat 131  Q
    |   ||||||| ||||||||    
T  15251984 cagcaaccattgtctctaat 15252003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 17521870 - 17521589
Alignment:
Q  12 gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat 111  Q
    |||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17521870 gaacctgtggtcagaacctgaaaacttagttttggatcatcacctcgctcagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatat 17521771  T
Q  112 ccataaccattatctctaatagtgcaaatttgtatccacatattc--ttgagtttaacagcgagacttctctatatatcttcagatattgttttcccaaa 209  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||  |||||||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  17521770 ccataaccattatctctaatagtgcaaatttgtaaccacatactcttttgagtttaacagcgagatttctctctatatcttcagatattgttttgccaaa 17521671  T
Q  210 caaaagcctctttgcaaggtgcattttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccacc 291  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17521670 caaaagcctctttgcaaggtgctttttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccacc 17521589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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