View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13951_low_1 (Length: 605)

Name: NF13951_low_1
Description: NF13951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13951_low_1
NF13951_low_1
[»] chr1 (4 HSPs)
chr1 (284-592)||(47799012-47799320)
chr1 (1-74)||(47799530-47799603)
chr1 (145-216)||(47799388-47799459)
chr1 (26-66)||(47799587-47799627)
[»] chr7 (1 HSPs)
chr7 (3-74)||(1528114-1528185)
[»] chr3 (1 HSPs)
chr3 (25-69)||(36086978-36087022)
[»] chr4 (2 HSPs)
chr4 (546-582)||(39777099-39777135)
chr4 (7-65)||(53302504-53302562)
[»] chr5 (1 HSPs)
chr5 (6-64)||(37190531-37190589)
[»] chr8 (1 HSPs)
chr8 (25-69)||(4756143-4756187)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 284 - 592
Target Start/End: Complemental strand, 47799320 - 47799012
Alignment:
Q  284 gagagataaacgcgaagcctcaccagtgactagagagaaaatggatgacctgagagttttcaaatcgatttgcggagctgcatctgcgttaccgacttac 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47799320 gagagataaacgcgaagcctcaccagtgactagagagaaaatggatgacctgagagttttcaaatcgatttgcggagctgcatctgcgttaccgacttac 47799221  T
Q  384 cgtgccgtgctggtaacacnnnnnnnaaaaatgttccaaaaattgttaaatagtaacgcnnnnnnnctctgttacttgtctatgttcatatatgcagtag 483  Q
    |||||||||||||||||||       |||||||||||||||| ||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  47799220 cgtgccgtgctggtaacactttttttaaaaatgttccaaaaaatgttaaatagtaacgctttttttctctgttacttgtctatgttcatatatgcagtag 47799121  T
Q  484 tacacaatgcaagtctgccacagttgaagaaaaaattggaatgcaattgcatcatcatgagacaaattggtgaagcttcctattcgttacacaaggtagg 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47799120 tacacaatgcaagtctgccacagttgaagaaaaaattggaatgcaattgcatcatcatgagacaaattggtgaagcttcctattcgttacacaaggtagg 47799021  T
Q  584 gaacaaatt 592  Q
    |||||||||    
T  47799020 gaacaaatt 47799012  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 47799603 - 47799530
Alignment:
Q  1 gaaagcaagcattgtacgataaattttggttgaagcatttgatcaaacataaaacaagaattgtaccatgaggc 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47799603 gaaagcaagcattgtacgataaattttggttgaagcatttgatcaaacataaaacaagaattgtaccatgaggc 47799530  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 47799459 - 47799388
Alignment:
Q  145 gagtgttcttgaatgataattgttgttttattcaggaaattagttttgttgtaaggaatcaaaacaactaac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47799459 gagtgttcttgaatgataattgttgttttattcaggaaattagttttgttgtaaggaatcaaaacaactaac 47799388  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 47799627 - 47799587
Alignment:
Q  26 ttggttgaagcatttgatcaaacataaaacaagaattgtac 66  Q
    |||||||||||||||||||||||| ||| |||| |||||||    
T  47799627 ttggttgaagcatttgatcaaacagaaagcaagcattgtac 47799587  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 1528185 - 1528114
Alignment:
Q  3 aagcaagcattgtacgataaattttggttgaagcatttgatcaaacataaaacaagaattgtaccatgaggc 74  Q
    ||||||||||| ||| |||||||||||||||||  ||| |||||||| |||||||| |||||||||| ||||    
T  1528185 aagcaagcattctaccataaattttggttgaagttttttatcaaacaaaaaacaagcattgtaccataaggc 1528114  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 36086978 - 36087022
Alignment:
Q  25 tttggttgaagcatttgatcaaacataaaacaagaattgtaccat 69  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||    
T  36086978 tttggttgaagcattttatcaaacataaaacatgaattgtaccat 36087022  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 546 - 582
Target Start/End: Original strand, 39777099 - 39777135
Alignment:
Q  546 caaattggtgaagcttcctattcgttacacaaggtag 582  Q
    |||||||| ||||||||||||||||||||||||||||    
T  39777099 caaattggcgaagcttcctattcgttacacaaggtag 39777135  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 53302504 - 53302562
Alignment:
Q  7 aagcattgtacgataaattttggttgaagcatttgatcaaacataaaacaagaattgta 65  Q
    ||||||||||| |||||  ||| ||||||||||| |||||||| |||||||| ||||||    
T  53302504 aagcattgtaccataaaggttgattgaagcattttatcaaacagaaaacaagcattgta 53302562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 37190531 - 37190589
Alignment:
Q  6 caagcattgtacgataaattttggttgaagcatttgatcaaacataaaacaagaattgt 64  Q
    |||||||||||| |||||  ||| ||||||||||| |||||||| |||||||| |||||    
T  37190531 caagcattgtaccataaaggttgattgaagcattttatcaaacacaaaacaagcattgt 37190589  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 4756143 - 4756187
Alignment:
Q  25 tttggttgaagcatttgatcaaacataaaacaagaattgtaccat 69  Q
    |||| ||||||||||| |||||||| |||||||| ||||||||||    
T  4756143 tttgattgaagcattttatcaaacagaaaacaagcattgtaccat 4756187  T

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