View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13951_low_11 (Length: 279)

Name: NF13951_low_11
Description: NF13951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13951_low_11
NF13951_low_11
[»] chr6 (2 HSPs)
chr6 (7-272)||(9665186-9665450)
chr6 (78-142)||(6160659-6160723)
[»] chr1 (6 HSPs)
chr1 (78-151)||(51046139-51046213)
chr1 (102-154)||(16475928-16475980)
chr1 (101-157)||(19316168-19316224)
chr1 (88-151)||(42146312-42146376)
chr1 (78-122)||(49773796-49773841)
chr1 (78-117)||(48131218-48131258)
[»] chr3 (7 HSPs)
chr3 (78-165)||(7827491-7827579)
chr3 (78-165)||(7829879-7829967)
chr3 (101-162)||(23332636-23332697)
chr3 (101-150)||(33634496-33634545)
chr3 (102-147)||(50601168-50601213)
chr3 (78-161)||(7824794-7824878)
chr3 (104-148)||(41732278-41732322)
[»] chr4 (4 HSPs)
chr4 (88-150)||(21729140-21729202)
chr4 (101-157)||(46411831-46411887)
chr4 (101-142)||(34969407-34969448)
chr4 (107-151)||(24837493-24837537)
[»] chr5 (4 HSPs)
chr5 (78-126)||(18999971-19000020)
chr5 (78-151)||(16575312-16575386)
chr5 (78-158)||(8544979-8545060)
chr5 (106-143)||(22169706-22169743)
[»] chr8 (6 HSPs)
chr8 (78-153)||(16907574-16907650)
chr8 (102-156)||(29293169-29293223)
chr8 (106-147)||(26072248-26072289)
chr8 (101-149)||(3102307-3102355)
chr8 (109-145)||(17444719-17444755)
chr8 (90-157)||(24044665-24044733)
[»] chr7 (4 HSPs)
chr7 (101-135)||(21407489-21407523)
chr7 (108-150)||(44718834-44718876)
chr7 (102-151)||(25674360-25674409)
chr7 (103-156)||(27552536-27552589)
[»] chr2 (3 HSPs)
chr2 (89-157)||(8761565-8761634)
chr2 (106-147)||(8784903-8784944)
chr2 (102-154)||(35327350-35327402)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 9665450 - 9665186
Alignment:
7 agttttacccacaaagagggttgaagtgtatctttttctactatgctccaaagttcaaatttannnnnnnngtggtggtcagagttcgaactcca-acct 105  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| ||        ||||||||| |||||||||| ||  ||||    
9665450 agttttacccacaaagaggggtgaagtgtatctttttctactatactccaaagtttaaatatatttttg--gtggtggtcggagttcgaaccccggacct 9665353  T
106 tacatatattatatattgttcatattaattaagttaaactcacgagaacaaagtttaaatttatttgtgtcaaagaaatagnnnnnnnnnnctctcaata 205  Q
    ||||||||||||||||||||||||  |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||          |||||||||    
9665352 tacatatattatatattgttcataccaattgagttaaactcacgaggacaaagtttaaatttatttgtgtcaaagaaatagttttttttttctctcaata 9665253  T
206 taatatcttaccaagaacgtgtttcgttggatggacggttagcatccattatctcgcgtccctatgc 272  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
9665252 taatatcttactaagaacgtgtttggttggatggacggttagcatccattatctcgcgtcccaatgc 9665186  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 6160659 - 6160723
Alignment:
78 gtggtggtcagagttcgaactccaaccttacatatattatatattgttcatattaattaagttaa 142  Q
    |||||||||||  |||||||||||||||| ||||||||||| ||||| ||||  || ||||||||    
6160659 gtggtggtcaggattcgaactccaaccttgcatatattatacattgtccataccaactaagttaa 6160723  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 51046213 - 51046139
Alignment:
78 gtggtggtcagagttcgaactcc-aaccttacatatattatatattgttcatattaattaagttaaactcacgag 151  Q
    ||||||||| ||||||||||||| |||||||||||| |||| |||||||||||  || | |||||||||||||||    
51046213 gtggtggtcggagttcgaactccgaaccttacatattttatgtattgttcataccaactgagttaaactcacgag 51046139  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 16475928 - 16475980
Alignment:
102 accttacatatattatatattgttcatattaattaagttaaactcacgagaac 154  Q
    |||||||||||||||| |||||||| ||  || ||||||||||||||||||||    
16475928 accttacatatattatgtattgttcctaccaactaagttaaactcacgagaac 16475980  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 19316224 - 19316168
Alignment:
101 aaccttacatatattatatattgttcatattaattaagttaaactcacgagaacaaa 157  Q
    ||||||| |||||||||  |||||||||| ||||| |||||||||||| ||||||||    
19316224 aaccttatatatattatgcattgttcatactaattgagttaaactcacaagaacaaa 19316168  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 42146376 - 42146312
Alignment:
88 gagttcgaactcc-aaccttacatatattatatattgttcatattaattaagttaaactcacgag 151  Q
    ||||||||||||| |||||| ||||||||||||||| ||| ||| |||| |||||| ||||||||    
42146376 gagttcgaactccgaaccttgcatatattatatattattcgtatcaattgagttaagctcacgag 42146312  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 49773796 - 49773841
Alignment:
78 gtggtggtcagagttcgaactcca-accttacatatattatatatt 122  Q
    |||||||||||||||||||||||| |||||| ||||||||| ||||    
49773796 gtggtggtcagagttcgaactccagaccttaaatatattatgtatt 49773841  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 48131218 - 48131258
Alignment:
78 gtggtggtcagagttcgaactcca-accttacatatattat 117  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
48131218 gtggtggtcagagtttgaactccagaccttacatatattat 48131258  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 7827579 - 7827491
Alignment:
78 gtggtggtcagagttcgaactcca-accttacatatattatatattgttcatattaattaagttaaactcacgagaacaaagtttaaat 165  Q
    ||||||||| |  ||||||||||| ||||||||||||||||  ||||| ||||| || | ||||||||||||||| |||| ||||||||    
7827579 gtggtggtcgggtttcgaactccagaccttacatatattatgcattgtccatatcaactgagttaaactcacgaggacaatgtttaaat 7827491  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 7829967 - 7829879
Alignment:
78 gtggtggtcagagttcgaactcca-accttacatatattatatattgttcatattaattaagttaaactcacgagaacaaagtttaaat 165  Q
    ||||||||| || |||||||| || ||||||||||||||||  ||||| ||||| || | ||||||||||||||| |||| ||||||||    
7829967 gtggtggtcggatttcgaacttcagaccttacatatattatgcattgtccatatcaactgagttaaactcacgaggacaatgtttaaat 7829879  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 23332697 - 23332636
Alignment:
101 aaccttacatatattatatattgttcatattaattaagttaaactcacgagaacaaagttta 162  Q
    |||| ||||||||||||  ||||||||||| || ||||||||  ||||||| ||||||||||    
23332697 aaccatacatatattatgcattgttcatatcaactaagttaagttcacgaggacaaagttta 23332636  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 33634545 - 33634496
Alignment:
101 aaccttacatatattatatattgttcatattaattaagttaaactcacga 150  Q
    |||||||||||||||||||||| || |||  || ||||||||||||||||    
33634545 aaccttacatatattatatattatttataccaactaagttaaactcacga 33634496  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 50601213 - 50601168
Alignment:
102 accttacatatattatatattgttcatattaattaagttaaactca 147  Q
    |||||||||||||||| ||||||||||| ||| | |||||||||||    
50601213 accttacatatattatttattgttcatactaactgagttaaactca 50601168  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 7824878 - 7824794
Alignment:
78 gtggtggtcagagttcgaactcca-accttacatatattatatattgttcatattaattaagttaaactcacgagaacaaagttt 161  Q
    ||||||||| |  ||||||||||| ||||| |||||||||| ||||||  |||| || | ||||||||||||||| |||| ||||    
7824878 gtggtggtcgggtttcgaactccagaccttgcatatattatgtattgtctatatcaactgagttaaactcacgaggacaatgttt 7824794  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 41732322 - 41732278
Alignment:
104 cttacatatattatatattgttcatattaattaagttaaactcac 148  Q
    ||||||||||||||||||| ||| |||||||| |||||| |||||    
41732322 cttacatatattatatattattcttattaattgagttaatctcac 41732278  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 21729202 - 21729140
Alignment:
88 gagttcgaactccaaccttacatatattatatattgttcatattaattaagttaaactcacga 150  Q
    |||||||||| ||| ||||||||||||||| || ||||| |||||| | ||||||||||||||    
21729202 gagttcgaaccccatccttacatatattatgtaatgttcctattaactgagttaaactcacga 21729140  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 46411831 - 46411887
Alignment:
101 aaccttacatatattatatattgttcatattaattaagttaaactcacgagaacaaa 157  Q
    ||||||| |||| ||||| ||||||||||  ||||||||||| ||||||||||||||    
46411831 aaccttatatatgttatacattgttcataccaattaagttaagctcacgagaacaaa 46411887  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 34969407 - 34969448
Alignment:
101 aaccttacatatattatatattgttcatattaattaagttaa 142  Q
    |||||| ||||||||||||||||||||||| || ||||||||    
34969407 aaccttgcatatattatatattgttcatatcaactaagttaa 34969448  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 24837493 - 24837537
Alignment:
107 acatatattatatattgttcatattaattaagttaaactcacgag 151  Q
    ||||||||||| |||||||||||| || |||||||| ||||||||    
24837493 acatatattatgtattgttcatatcaactaagttaagctcacgag 24837537  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 19000020 - 18999971
Alignment:
78 gtggtggtcagagttcgaactccaa-ccttacatatattatatattgttc 126  Q
    ||||||||||||||| |||| |||| ||||||||||||||||||||||||    
19000020 gtggtggtcagagtttgaaccccaaaccttacatatattatatattgttc 18999971  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 16575312 - 16575386
Alignment:
78 gtggtggtcagagttcgaactcca-accttacatatattatatattgttcatattaattaagttaaactcacgag 151  Q
    ||||||||||| ||| |||||||  ||||||||||||||||||||||| ||||  | ||||| ||| ||||||||    
16575312 gtggtggtcagggtttgaactccggaccttacatatattatatattgtccataccagttaagctaagctcacgag 16575386  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 8544979 - 8545060
Alignment:
78 gtggtggtcagagttcgaactcca-accttacatatattatatattgttcatattaattaagttaaactcacgagaacaaag 158  Q
    ||||||||| |||||||||||||  ||||| ||||||||||  ||||| | ||| || | |||||| |||||||||||||||    
8544979 gtggtggtcggagttcgaactccggaccttgcatatattatgcattgtccttatcaactgagttaagctcacgagaacaaag 8545060  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 22169743 - 22169706
Alignment:
106 tacatatattatatattgttcatattaattaagttaaa 143  Q
    ||||||||||||| | ||||||||||||||||||||||    
22169743 tacatatattatacaatgttcatattaattaagttaaa 22169706  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 16907650 - 16907574
Alignment:
78 gtggtggtcagagttcgaactcc-aaccttacatatattatatattgttcatattaattaagttaaactcacgagaa 153  Q
    ||||||||||| ||||||||||| |||| || |||||||||  |||||||| || || | |||||||||||||||||    
16907650 gtggtggtcagggttcgaactcctaaccatatatatattatgcattgttcaaatcaactgagttaaactcacgagaa 16907574  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 29293223 - 29293169
Alignment:
102 accttacatatattatatattgttcatattaattaagttaaactcacgagaacaa 156  Q
    |||||||||||||||||||||||  ||||||| | |||||| |||||||| ||||    
29293223 accttacatatattatatattgtctatattaactgagttaagctcacgaggacaa 29293169  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 26072248 - 26072289
Alignment:
106 tacatatattatatattgttcatattaattaagttaaactca 147  Q
    ||||||||||||||| ||||||||| |||| |||||||||||    
26072248 tacatatattatataatgttcatatcaattgagttaaactca 26072289  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 3102355 - 3102307
Alignment:
101 aaccttacatatattatatattgttcatattaattaagttaaactcacg 149  Q
    |||||||||||||||||| ||||||| | | ||||||||||| ||||||    
3102355 aaccttacatatattatacattgttcttgtcaattaagttaagctcacg 3102307  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 17444719 - 17444755
Alignment:
109 atatattatatattgttcatattaattaagttaaact 145  Q
    |||||||||||||||||| ||| ||||||||||||||    
17444719 atatattatatattgttcctatcaattaagttaaact 17444755  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 157
Target Start/End: Original strand, 24044665 - 24044733
Alignment:
90 gttcgaactcca-accttacatatattatatattgttcatattaattaagttaaactcacgagaacaaa 157  Q
    |||||||||||  ||||||||||| ||||||||||||  ||  |||||||||||  |||||||||||||    
24044665 gttcgaactccggaccttacatattttatatattgtttttaccaattaagttaagttcacgagaacaaa 24044733  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 21407523 - 21407489
Alignment:
101 aaccttacatatattatatattgttcatattaatt 135  Q
    ||||||| |||||||||||||||||||||||||||    
21407523 aaccttatatatattatatattgttcatattaatt 21407489  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 44718834 - 44718876
Alignment:
108 catatattatatattgttcatattaattaagttaaactcacga 150  Q
    |||||||||||||||||| |||| |||| ||||||||||||||    
44718834 catatattatatattgtttatatcaattgagttaaactcacga 44718876  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 25674409 - 25674360
Alignment:
102 accttacatatattatatattgttcatattaattaagttaaactcacgag 151  Q
    ||||||||||||||||| ||||||||||  |||||||||| | |||||||    
25674409 accttacatatattatacattgttcataccaattaagttataatcacgag 25674360  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 27552536 - 27552589
Alignment:
103 ccttacatatattatatattgttcatattaattaagttaaactcacgagaacaa 156  Q
    |||||||||||||||  ||||||| ||| |||||||||||| ||||||| ||||    
27552536 ccttacatatattatggattgttcttatcaattaagttaaattcacgagtacaa 27552589  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 8761565 - 8761634
Alignment:
89 agttcgaactccaacc-ttacatatattatatattgttcatattaattaagttaaactcacgagaacaaa 157  Q
    |||||||||||||||| ||||||||||||| |||||| ||||  || | |||||| |||||||| |||||    
8761565 agttcgaactccaacccttacatatattatgtattgtccataccaactgagttaagctcacgaggacaaa 8761634  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 8784903 - 8784944
Alignment:
106 tacatatattatatattgttcatattaattaagttaaactca 147  Q
    ||||||||||||||||||||  ||| ||||||||||||||||    
8784903 tacatatattatatattgtttctatcaattaagttaaactca 8784944  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 35327402 - 35327350
Alignment:
102 accttacatatattatatattgttcatattaattaagttaaactcacgagaac 154  Q
    |||| |||||| ||||| ||||||||||| || | ||||||||||||||||||    
35327402 acctaacatattttatacattgttcatatcaactgagttaaactcacgagaac 35327350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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