View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13951_low_12 (Length: 259)
Name: NF13951_low_12
Description: NF13951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13951_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 35093372 - 35093630
Alignment:
| Q |
1 |
ctctttacctgcatctgtgctgctgagcagtttctccacatttaatcctttggttctgacttaactcttgtcactgtgtagatgggctatgagttccttt |
100 |
Q |
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| T |
35093372 |
ctctttatatgcatctgtgctgctgagcagtttctccacatttaatcctttggttctgacttaactcttgtcactgtgtagatgggctatgagttccttt |
35093471 |
T |
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| Q |
101 |
accctgaagggcaaaccttctgatcatgctccagttgcttcagtgagttctagtgcccttacaccaacatcttctaatgccagcttaggtattcttaatc |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35093472 |
accctgaagggcaaaccttttgatcatgctccagttgcttctgtgagttctagtgcccttacaccaacatcttctaatgccagcttaggtattcttaatc |
35093571 |
T |
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| Q |
201 |
atcactctcttatattaaatttaatttgctaattgcataatcctctgaatatctgatga |
259 |
Q |
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| T |
35093572 |
atcactctcttatattaaatttaatttgctaattgcataatcctctgaatatctgatga |
35093630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 23 - 252
Target Start/End: Original strand, 32585642 - 32585871
Alignment:
| Q |
23 |
ctgagcagtttctccacatttaatcctttggttctgacttaactcttgtcactgtgtagatgggctatgagttcctttaccctgaagggcaaaccttctg |
122 |
Q |
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|||| ||||||||| |||||||| || ||| ||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||| ||||||| |
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| T |
32585642 |
ctgatcagtttctctacatttaacccattgattctgacttaactcttgtctctgtgtagatgggctatgagctccttgactctgaagggcaagccttctg |
32585741 |
T |
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| Q |
123 |
atcatgctccagttgcttcagtgagttctagtgcccttacaccaacatcttctaatgccagcttaggtattcttaatcatcactctcttatattaaattt |
222 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| ||| ||||||||||||||||| |
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| T |
32585742 |
atcatgctccagttgcttctgtgagttctagtgcccttacaccaacatcttcaaatgccagctcaggtatgcttaatgatcggtctcttatattaaattt |
32585841 |
T |
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| Q |
223 |
aatttgctaattgcataatcctctgaatat |
252 |
Q |
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||||| ||||||||| |||||||||||||| |
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| T |
32585842 |
aattttctaattgcacaatcctctgaatat |
32585871 |
T |
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