View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13951_low_2 (Length: 544)

Name: NF13951_low_2
Description: NF13951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13951_low_2
NF13951_low_2
[»] chr4 (20 HSPs)
chr4 (52-530)||(554747-555225)
chr4 (169-269)||(1596891-1596993)
chr4 (186-276)||(1597707-1597799)
chr4 (52-120)||(5662088-5662156)
chr4 (60-120)||(51400152-51400212)
chr4 (52-120)||(1580043-1580112)
chr4 (52-120)||(35447685-35447753)
chr4 (66-118)||(376193-376245)
chr4 (52-120)||(18419290-18419358)
chr4 (52-120)||(31330059-31330127)
chr4 (67-120)||(1363685-1363738)
chr4 (55-120)||(2133519-2133584)
chr4 (52-120)||(20818218-20818284)
chr4 (68-120)||(9779218-9779270)
chr4 (52-120)||(20702336-20702404)
chr4 (56-120)||(23431669-23431733)
chr4 (68-120)||(35104116-35104168)
chr4 (52-120)||(46196741-46196809)
chr4 (52-120)||(47931365-47931433)
chr4 (52-120)||(50561239-50561307)
[»] chr2 (16 HSPs)
chr2 (186-310)||(41218803-41218928)
chr2 (52-120)||(33676750-33676818)
chr2 (184-231)||(41224472-41224519)
chr2 (52-118)||(39271623-39271689)
chr2 (52-120)||(36080205-36080276)
chr2 (347-396)||(41225927-41225976)
chr2 (52-120)||(1071173-1071241)
chr2 (52-120)||(24005115-24005182)
chr2 (52-120)||(24100651-24100719)
chr2 (186-233)||(41226040-41226087)
chr2 (54-120)||(4652504-4652570)
chr2 (71-120)||(21925684-21925733)
chr2 (52-120)||(12069424-12069492)
chr2 (60-120)||(13836992-13837052)
chr2 (52-120)||(19813912-19813979)
chr2 (52-120)||(41014252-41014319)
[»] chr3 (18 HSPs)
chr3 (52-120)||(5492508-5492576)
chr3 (52-120)||(4577847-4577915)
chr3 (52-122)||(26977968-26978038)
chr3 (52-120)||(796428-796496)
chr3 (70-118)||(15522480-15522528)
chr3 (52-120)||(22102400-22102468)
chr3 (52-120)||(22177348-22177416)
chr3 (52-120)||(50098990-50099057)
chr3 (55-118)||(51006153-51006216)
chr3 (52-110)||(14418970-14419028)
chr3 (52-118)||(45644103-45644169)
chr3 (60-120)||(3418772-3418832)
chr3 (60-120)||(3890228-3890288)
chr3 (68-120)||(7430043-7430095)
chr3 (52-120)||(25842320-25842388)
chr3 (52-120)||(30102564-30102632)
chr3 (52-118)||(38358635-38358698)
chr3 (52-120)||(40360304-40360372)
[»] chr7 (14 HSPs)
chr7 (52-118)||(31283501-31283567)
chr7 (52-120)||(19371705-19371773)
chr7 (52-120)||(36609860-36609928)
chr7 (52-120)||(4550290-4550358)
chr7 (52-120)||(25834537-25834605)
chr7 (52-120)||(32883110-32883178)
chr7 (52-118)||(372624-372690)
chr7 (68-118)||(26710283-26710333)
chr7 (54-120)||(45000969-45001035)
chr7 (55-120)||(7628666-7628731)
chr7 (60-117)||(10040393-10040450)
chr7 (55-120)||(25610612-25610677)
chr7 (52-121)||(40417499-40417568)
chr7 (52-120)||(39465807-39465875)
[»] chr1 (27 HSPs)
chr1 (52-118)||(43577512-43577578)
chr1 (52-120)||(11407258-11407326)
chr1 (52-120)||(48419969-48420037)
chr1 (52-118)||(13303925-13303991)
chr1 (52-120)||(773723-773794)
chr1 (57-118)||(24232194-24232255)
chr1 (60-120)||(7548414-7548474)
chr1 (52-120)||(11344919-11344987)
chr1 (60-120)||(29689382-29689442)
chr1 (52-120)||(34969365-34969433)
chr1 (60-115)||(29716899-29716954)
chr1 (58-120)||(1570266-1570328)
chr1 (60-118)||(13057269-13057327)
chr1 (52-122)||(33326790-33326860)
chr1 (60-118)||(48995470-48995528)
chr1 (52-120)||(47402821-47402890)
chr1 (52-120)||(115902-115970)
chr1 (52-120)||(8699261-8699329)
chr1 (52-120)||(10844279-10844347)
chr1 (60-120)||(13315250-13315310)
chr1 (52-120)||(18227001-18227069)
chr1 (52-120)||(25298033-25298101)
chr1 (52-120)||(25822152-25822219)
chr1 (52-120)||(31528615-31528683)
chr1 (68-120)||(43575683-43575735)
chr1 (52-120)||(46880041-46880109)
chr1 (52-120)||(52043358-52043426)
[»] scaffold0118 (1 HSPs)
scaffold0118 (52-120)||(14730-14798)
[»] chr5 (15 HSPs)
chr5 (52-120)||(17210547-17210615)
chr5 (60-118)||(5776547-5776604)
chr5 (52-120)||(1612007-1612075)
chr5 (60-120)||(19650691-19650751)
chr5 (52-120)||(36226448-36226516)
chr5 (52-120)||(38697021-38697089)
chr5 (53-120)||(832163-832230)
chr5 (53-120)||(36267099-36267166)
chr5 (67-117)||(12082987-12083037)
chr5 (52-118)||(24836748-24836814)
chr5 (60-118)||(40716211-40716269)
chr5 (52-120)||(8786729-8786797)
chr5 (52-120)||(19128620-19128688)
chr5 (60-120)||(28766280-28766340)
chr5 (52-120)||(42027669-42027737)
[»] scaffold0445 (1 HSPs)
scaffold0445 (54-120)||(4811-4877)
[»] chr8 (22 HSPs)
chr8 (52-118)||(1554755-1554821)
chr8 (52-117)||(1170488-1170553)
chr8 (52-117)||(4418384-4418449)
chr8 (52-120)||(3739559-3739627)
chr8 (68-120)||(4437874-4437926)
chr8 (68-120)||(33192561-33192613)
chr8 (52-120)||(18918341-18918411)
chr8 (81-120)||(30800645-30800684)
chr8 (66-120)||(38283643-38283697)
chr8 (52-118)||(38498482-38498548)
chr8 (52-84)||(5049702-5049734)
chr8 (60-120)||(11929657-11929717)
chr8 (60-120)||(15872095-15872155)
chr8 (52-120)||(15919571-15919639)
chr8 (68-120)||(24023984-24024036)
chr8 (68-120)||(24688608-24688660)
chr8 (52-120)||(25722779-25722847)
chr8 (52-120)||(27020517-27020585)
chr8 (52-120)||(29684215-29684283)
chr8 (68-120)||(32172985-32173037)
chr8 (52-120)||(34966680-34966748)
chr8 (52-120)||(41942505-41942573)
[»] chr6 (7 HSPs)
chr6 (66-120)||(21104539-21104592)
chr6 (52-120)||(28712008-28712076)
chr6 (52-120)||(31204087-31204155)
chr6 (52-120)||(8771737-8771805)
chr6 (52-120)||(17353087-17353154)
chr6 (52-119)||(20715814-20715882)
chr6 (52-120)||(22535486-22535554)
[»] scaffold0013 (1 HSPs)
scaffold0013 (52-120)||(41569-41638)
[»] scaffold0196 (2 HSPs)
scaffold0196 (52-120)||(8725-8793)
scaffold0196 (52-120)||(8217-8285)


Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 52 - 530
Target Start/End: Original strand, 554747 - 555225
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagttatcttgtcaaaaaacaatctaaatatctat 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  554747 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagttatcttgtcaaaaaacaatctaaatatctat 554846  T
Q  152 ggatacattttcattatcagagatatataaatgcagaaacaagagactatcttcctactgagagaatgatatcagaaaacaaaaacattgagttataatt 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  554847 ggatacattttcattatcagagatatataaatgcagaaacaagagactatcttcctactgagagaatgatatcagaaaacaaaaacattgagttataatt 554946  T
Q  252 tcatgtttgtatcagtttctagtatgcctctttagtcggtaagaggaggaacattgtggcatctatgttccttcatgatcagattatagttttgtttttt 351  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  554947 tcatgtttgtatcagtttctagtatgtctctttagtcggtaagaggaggaacattgtggcatctatgttccttcatgatcagattatagttttgtttttt 555046  T
Q  352 gctttaatttatatgaagttaattatgagaactgcaaatggaaatgttttttgaaagagttgaataaaagagaattgaagcgatcgagaaatttatttaa 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  555047 gctttaatttatatgaagttaattatgagaactgcaaatggaaatgttttttgaaagagttgaataaaagagaattgaagcgatcgagaaatttatttaa 555146  T
Q  452 tattagtggcgaataatgtcgatgttaattaagagttcaatgttttctgattgtgttgatggtggaatgattgtagtga 530  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  555147 tattagtggcgaataatgtcgatgttaattaagagttcaatgttttctgattgtgttgatggtggaatgattgtagtga 555225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 169 - 269
Target Start/End: Original strand, 1596891 - 1596993
Alignment:
Q  169 cagagatatataaatgcagaaacaagagactatcttcctactgagagaatgatatcagaaaacaaaaaca--ttgagttataatttcatgtttgtatcag 266  Q
    ||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||   |||||| |||||||||||||  |||||    
T  1596891 cagagatatctaaatgcagaaacaagagactaccttcctactgacagaatgatatcagaaaacaaaaacactgtgagttctaatttcatgtttagatcag 1596990  T
Q  267 ttt 269  Q
    |||    
T  1596991 ttt 1596993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 186 - 276
Target Start/End: Original strand, 1597707 - 1597799
Alignment:
Q  186 agaaacaagagactatcttcctactgagagaatgatatcagaaaacaaaaaca--ttgagttataatttcatgtttgtatcagtttctagtat 276  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||| |||   |||||| ||||||||||||   |||||||||||||||    
T  1597707 agaaacaagagactatcttcctactgacagagtgatatcagaaaacaaagacaccgtgagttctaatttcatgttcacatcagtttctagtat 1597799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 5662156 - 5662088
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||||||| ||||||||||| || ||||||| ||| || |||||||||||||||| ||||||||    
T  5662156 aatgacatcaacaacaatctttattatataaaaaattatttaaaggtataattgggataacgaaaaagt 5662088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 51400152 - 51400212
Alignment:
Q  60 caacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||| ||||||||||| |||||||| | ||| ||||||||||||||||||||||||||||    
T  51400152 caacaacaatctttattatagaaaaagttatttaatggtataattgggataatgaaaaagt 51400212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 1580043 - 1580112
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatga-ttgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||||||| ||||||||||| |||||||| | | || || |||||||||||||||||||||||||    
T  1580043 aatgacatcaacaacaatctttattatagaaaaagttattttaaaggtataattgggataatgaaaaagt 1580112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 35447685 - 35447753
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| |||||||| | ||| || |||||||||| ||||||||||||||    
T  35447685 aatgacaccaacaacaatctttattatagaaaaagttatttaagggtataattgagataatgaaaaagt 35447753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 376245 - 376193
Alignment:
Q  66 caatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaa 118  Q
    ||||||||||| |||||||||| ||| || | |||||||||||||||||||||    
T  376245 caatctttattatagaaaaaattatttaaagatataattgggataatgaaaaa 376193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 18419358 - 18419290
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||||||| | ||||||||| ||||||||||  || || ||||||||||  |||||||||||||    
T  18419358 aatgacatcaacaacgatctttattatagaaaaaattgttcaagggtataattgaaataatgaaaaagt 18419290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 31330059 - 31330127
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    |||||||||||||  |||||||||| || ||||||| ||| ||  |||||||||||||||| |||||||    
T  31330059 aatgacatcaacaataatctttattataaaaaaaattatttaagagtataattgggataattaaaaagt 31330127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 1363738 - 1363685
Alignment:
Q  67 aatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    |||||||||| ||||||||||  || || ||||||||||||||||| |||||||    
T  1363738 aatctttattttagaaaaaattgtttaagggtataattgggataataaaaaagt 1363685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 2133584 - 2133519
Alignment:
Q  55 gacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    |||| ||||| ||||||||||| ||||||||||  || ||  ||||||||| ||||||||||||||    
T  2133584 gacaccaacaacaatctttattatagaaaaaattgtttaagagtataattgagataatgaaaaagt 2133519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 20818218 - 20818284
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||||||| ||||||||||  || |||||||  || || ||||||||||||||| |||||||||    
T  20818218 aatgacatcaacaacaatctttat--tataaaaaattgtttaagggtataattgggatagtgaaaaagt 20818284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 9779218 - 9779270
Alignment:
Q  68 atctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||| || |||||||  || || |||||||||||||||||||||||||    
T  9779218 atctttattatataaaaaattgtttaagggtataattgggataatgaaaaagt 9779270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 20702404 - 20702336
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| | ||||||||| |||||||| |  || || ||||||||||| |||||||||||||    
T  20702404 aatgacaccaacaacgatctttattatagaaaaagttgtttaagggtataattggaataatgaaaaagt 20702336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 23431669 - 23431733
Alignment:
Q  56 acatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||  ||||||||||| ||||||||||  || || |||||||||| |||||| |||||||    
T  23431669 acatcaactacaatctttattatagaaaaaattgtttaagggtataattgagataataaaaaagt 23431733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 35104116 - 35104168
Alignment:
Q  68 atctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||| |||||||| |  ||||| ||||||||||| |||||||||||||    
T  35104116 atctttattatagaaaaagttgttgaagggtataattggaataatgaaaaagt 35104168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 46196809 - 46196741
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||| ||||||| ||||||||||| ||||| || |  || || || ||||||||||||||||||||||    
T  46196809 aatgatatcaacaacaatctttattatagaataagttgtttaaaggcataattgggataatgaaaaagt 46196741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 47931365 - 47931433
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| || ||||| |  || || |||||||||||||||| ||||||||    
T  47931365 aatgacaccaacaacaatctttattatataaaaagttgtttaagggtataattgggataaagaaaaagt 47931433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 50561239 - 50561307
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| |||| |||||| ||||||||||  || || | |||||||| ||||||||||||||    
T  50561239 aatgacaccaacaacaatttttattatagaaaaaattgtttaaggatataattgagataatgaaaaagt 50561307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 186 - 310
Target Start/End: Complemental strand, 41218928 - 41218803
Alignment:
Q  186 agaaacaagagactatcttcctactgagagaatgatatcagaaaacaaaaaca--ttgagttataatttcatgtttgtatcagtttctagtatgcctctt 283  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| ||||   ||||||  ||||||||||||   ||||||||||||||| |||||    
T  41218928 agaaacaaaagactatctttctactgagagaatgatatcagaaaacaagaacactgtgagtt-caatttcatgtttacgtcagtttctagtatgtctctt 41218830  T
Q  284 tagtcggtaagaggaggaacattgtgg 310  Q
    ||||| |||  | ||||||||| ||||    
T  41218829 tagtcagtagcaagaggaacatagtgg 41218803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 33676750 - 33676818
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| ||||||||||  || || |||||||||||||||||||||||||    
T  33676750 aatgacaccaacaacaatctttattatagaaaaaattgtttaagggtataattgggataatgaaaaagt 33676818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 41224519 - 41224472
Alignment:
Q  184 gcagaaacaagagactatcttcctactgagagaatgatatcagaaaac 231  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||    
T  41224519 gcagaagcaagagactatcttcctactgaaagaatgatatcagaaaac 41224472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 39271623 - 39271689
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaa 118  Q
    ||||||| ||||| ||||||||||| |||||||||| ||| || | ||||||||||||||| |||||    
T  39271623 aatgacaccaacaacaatctttattatagaaaaaattatttaaggatataattgggataataaaaaa 39271689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 36080276 - 36080205
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattg---aatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| ||||||||||  |||   || |||||||||||||||||||||||||    
T  36080276 aatgacaccaacaacaatctttattatagaaaaaattgttgtttaagggtataattgggataatgaaaaagt 36080205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 347 - 396
Target Start/End: Complemental strand, 41225976 - 41225927
Alignment:
Q  347 tttttgctttaatttatatgaagttaattatgagaactgcaaatggaaat 396  Q
    ||||||||||||||||||||| | |||||| ||||| |||||||||||||    
T  41225976 tttttgctttaatttatatgatggtaattaagagaattgcaaatggaaat 41225927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 1071173 - 1071241
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||||||| ||||||||||| ||||||||||  || ||  |||||||| |||||| ||||||||    
T  1071173 aatgacatcaacaacaatctttattatagaaaaaattgtttaagagtataattaggataacgaaaaagt 1071241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 24005115 - 24005182
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||||||||    
T  24005115 aatgacaccaacaacgatctttattatagaaaaaat-atttaagggtataattggaataatgaaaaagt 24005182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 24100719 - 24100651
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| ||||||| ||  || || ||||||||| |||||||||||||||    
T  24100719 aatgacaccaacaacaatctttattatagaaaatattgtttaagggtataatttggataatgaaaaagt 24100651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 41226087 - 41226040
Alignment:
Q  186 agaaacaagagactatcttcctactgagagaatgatatcagaaaacaa 233  Q
    ||||||| ||||||||||||||||| | ||||| ||||||||||||||    
T  41226087 agaaacaggagactatcttcctactcaaagaatcatatcagaaaacaa 41226040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 4652504 - 4652570
Alignment:
Q  54 tgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||||| |||||||||||  |||||||||  || ||  |||||||||| |||||||||||||    
T  4652504 tgacatcaacaacaatctttattaaagaaaaaattgtttaagtgtataattggaataatgaaaaagt 4652570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 21925733 - 21925684
Alignment:
Q  71 tttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    |||||| |||||||||| ||| || ||||||||| |||||||||||||||    
T  21925733 tttattatagaaaaaattatttaagggtataattaggataatgaaaaagt 21925684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 12069492 - 12069424
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| |||||||| |  || ||  |||||||| |||||||||||||||    
T  12069492 aatgacaccaacaacaatctttattatagaaaaagttgtttaagagtataattaggataatgaaaaagt 12069424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 13836992 - 13837052
Alignment:
Q  60 caacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||| ||||||||||| ||||||||||  || ||  |||||||| |||||||||||||||    
T  13836992 caacaacaatctttattatagaaaaaattgttcaagagtataattcggataatgaaaaagt 13837052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 19813912 - 19813979
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| ||||||||||  || ||  |||||||| |||||||||||||||    
T  19813912 aatgacaccaacaacaatctttattatagaaaaaattgtttaagtgtataatt-ggataatgaaaaagt 19813979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 41014319 - 41014252
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||||||| |||| |||||| |||||||| || || || || ||||||| ||||||||||||||    
T  41014319 aatgacatcaacaacaatatttattatagaaaaattg-tttaaaggcataattgagataatgaaaaagt 41014252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 5492508 - 5492576
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||||||| ||||||||||| |||||||| |  || || |||||||||||||||||||||||||    
T  5492508 aatgacatcaacaacaatctttattatagaaaaagttgtttaaaggtataattgggataatgaaaaagt 5492576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 4577847 - 4577915
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| |||||||||| ||| || |||| |||| |||||||||||||||    
T  4577847 aatgacaccaacaacaatctttattatagaaaaaattatttaaaggtagaatttggataatgaaaaagt 4577915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 26978038 - 26977968
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagtta 122  Q
    ||||||| ||||| ||||||||||| || ||||| | ||| || |||||||||| ||||||||||||||||    
T  26978038 aatgacagcaacaacaatctttattataaaaaaatttatttaaaggtataattgagataatgaaaaagtta 26977968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 796496 - 796428
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    |||||||  |||| ||||||||||| || ||||| | ||| || |||||||||||||||||||||||||    
T  796496 aatgacacaaacaacaatctttattatataaaaagttatttaaaggtataattgggataatgaaaaagt 796428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 15522528 - 15522480
Alignment:
Q  70 ctttattctagaaaaaatgattgaatggtataattgggataatgaaaaa 118  Q
    ||||||| |||||||||| ||| || |||||||||||||||||||||||    
T  15522528 ctttattatagaaaaaattatttaaaggtataattgggataatgaaaaa 15522480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 22102468 - 22102400
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| | |||||| |  || || |||||||||||||||||||||||||    
T  22102468 aatgacaccaacaacaatctttattatggaaaaagttgtttaagggtataattgggataatgaaaaagt 22102400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 22177416 - 22177348
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| | |||||| |  || || |||||||||||||||||||||||||    
T  22177416 aatgacaccaacaacaatctttattatggaaaaagttgtttaagggtataattgggataatgaaaaagt 22177348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 50099057 - 50098990
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| |||||||| |  || || |||||||||||||||||||||||||    
T  50099057 aatgacaccaacaacaatctttattatagaaaaagttgtttaa-ggtataattgggataatgaaaaagt 50098990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 51006216 - 51006153
Alignment:
Q  55 gacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaa 118  Q
    |||| ||||| ||||||||||| |||||||||| ||| ||  ||||||||| ||||||||||||    
T  51006216 gacaccaacaacaatctttattatagaaaaaattatttaagagtataattgagataatgaaaaa 51006153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 14419028 - 14418970
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggata 110  Q
    ||||||||||||| ||||||||||| ||||||||||  || || |||||||||| ||||    
T  14419028 aatgacatcaacaacaatctttattatagaaaaaattgtttaagggtataattgagata 14418970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 45644169 - 45644103
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaa 118  Q
    ||||||| ||||  ||||||||||| |||||||| |  || || |||||||||||||||||||||||    
T  45644169 aatgacaccaacgacaatctttattatagaaaaagttgtttaagggtataattgggataatgaaaaa 45644103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 3418832 - 3418772
Alignment:
Q  60 caacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||| ||||||||||| |||||||| |  || || ||||||||||| |||||||||||||    
T  3418832 caacaacaatctttattatagaaaaagttgtttaagggtataattggaataatgaaaaagt 3418772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 3890228 - 3890288
Alignment:
Q  60 caacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||| ||||||||||| |||||||| |  || || |||||||||| ||||||||||||||    
T  3890228 caacaacaatctttattgtagaaaaagttgtttaagggtataattgagataatgaaaaagt 3890288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 7430043 - 7430095
Alignment:
Q  68 atctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||| |||||||| |  || |||||||||||||||||||| |||||||    
T  7430043 atctttattatagaaaaagttgtttaatggtataattgggataataaaaaagt 7430095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 25842388 - 25842320
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||| ||||||| | ||||||||| || ||||  | ||| || |||||||||||||||||||||||||    
T  25842388 aatgatatcaacaacgatctttattatataaaaggttatttaagggtataattgggataatgaaaaagt 25842320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 30102564 - 30102632
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| | ||||||||| |||||||| |  || || |||||||||| ||||||||||||||    
T  30102564 aatgacaccaacaacgatctttattatagaaaaagttgtttaagggtataattgagataatgaaaaagt 30102632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 38358698 - 38358635
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaa 118  Q
    ||||||| ||||| ||||||||||   ||||||| |  || ||||||||||||||||||||||||||    
T  38358698 aatgacaccaacaacaatctttat---agaaaaagttgtttaatggtataattgggataatgaaaaa 38358635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 40360372 - 40360304
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| ||||||||||  || || | ||||| | |||||||||||||||    
T  40360372 aatgacaccaacaacaatctttattatagaaaaaattgtttaaggatataacttggataatgaaaaagt 40360304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 31283501 - 31283567
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaa 118  Q
    ||||||| ||||| ||||||||||| ||||||||||  || ||| ||||||||||||||||||||||    
T  31283501 aatgacaccaacaacaatctttattatagaaaaaattgtttaatagtataattgggataatgaaaaa 31283567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 19371773 - 19371705
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| |||||||| |  || || |||||||||||||||||||||||||    
T  19371773 aatgacaccaacaacaatctttattatagaaaaagttgtttaagggtataattgggataatgaaaaagt 19371705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 36609860 - 36609928
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| ||||||||||  || || |||||||||| ||||||||||||||    
T  36609860 aatgacaccaacaacaatctttattatagaaaaaattgtttaagggtataattgagataatgaaaaagt 36609928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 4550358 - 4550290
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||||||| ||||||||||| || |||||||  || || ||||||||||  |||||||||||||    
T  4550358 aatgacatcaacaacaatctttattatataaaaaattgtttaagggtataattgatataatgaaaaagt 4550290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 25834605 - 25834537
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||||||| ||||||||||| ||| ||||||  || || ||||||| || ||||||||||||||    
T  25834605 aatgacatcaacaacaatctttattataggaaaaattgtttaagggtataaatgagataatgaaaaagt 25834537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 32883178 - 32883110
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||| | |||| |||||| ||||||||||  || ||||||||||||||||| ||||||||||    
T  32883178 aatgacaacaaaaacaatatttattatagaaaaaattgtttaatggtataattgggatgatgaaaaagt 32883110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 372690 - 372624
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaa 118  Q
    ||||| ||||||| ||||||| ||| ||||||||||  || || |||| ||||||||||||||||||    
T  372690 aatgatatcaacaacaatcttcattatagaaaaaattgtttaaaggtagaattgggataatgaaaaa 372624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 26710283 - 26710333
Alignment:
Q  68 atctttattctagaaaaaatgattgaatggtataattgggataatgaaaaa 118  Q
    ||||||||| |||||||||| ||| ||  ||||||||||||||||||||||    
T  26710283 atctttattatagaaaaaattatttaagtgtataattgggataatgaaaaa 26710333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 45000969 - 45001035
Alignment:
Q  54 tgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||||| ||||||||||| |||||||| |  || || |||||||||| |||||| |||||||    
T  45000969 tgacatcaacaacaatctttattatagaaaaagttgtttaagggtataattgagataataaaaaagt 45001035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 7628731 - 7628666
Alignment:
Q  55 gacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    |||||||||| ||||||||||| |||||||| |  || |||| ||||||| |||||||| ||||||    
T  7628731 gacatcaacaacaatctttattatagaaaaagttgtttaatgatataattaggataatgtaaaagt 7628666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 10040450 - 10040393
Alignment:
Q  60 caacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaa 117  Q
    ||||| ||||||||||| ||||||||||  || || |||||| |||||||||||||||    
T  10040450 caacaacaatctttattatagaaaaaattgtttaacggtatagttgggataatgaaaa 10040393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 25610612 - 25610677
Alignment:
Q  55 gacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    |||||||||| ||||||||||| |||||||| |  || || |||||||||| ||||| ||||||||    
T  25610612 gacatcaacaacaatctttattatagaaaaagttgtttaagggtataattgagataacgaaaaagt 25610677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 40417568 - 40417499
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagtt 121  Q
    ||||||| ||| | |||| |||||| ||||||||||  || ||||||||||| |||||||||| ||||||    
T  40417568 aatgacaccaagaacaatttttattatagaaaaaattgtttaatggtataatagggataatgataaagtt 40417499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 39465875 - 39465807
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| |||| |||||| || ||||| | | | || |||||||||||||||||||||||||    
T  39465875 aatgacaccaacaacaatttttattataaaaaaagttacttaagggtataattgggataatgaaaaagt 39465807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 43577512 - 43577578
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaa 118  Q
    ||||| |||| || ||||||||||| |||||||||| ||| || |||||||||||||||||||||||    
T  43577512 aatgaaatcagcaacaatctttattatagaaaaaattatttaagggtataattgggataatgaaaaa 43577578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 11407326 - 11407258
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||| ||| | ||||||||||||||| ||||  || || |||||||||||||||||||||||||    
T  11407326 aatgacatcgacaacgatctttattctagaataaattgtttaagggtataattgggataatgaaaaagt 11407258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 48420037 - 48419969
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| | ||||||||| |||||||| |  || ||||||||||||||||||||||||||||    
T  48420037 aatgacaccaacaacgatctttattatagaaaaagttgtttaatggtataattgggataatgaaaaagt 48419969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 13303991 - 13303925
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaa 118  Q
    ||||||| ||||| ||||||||||| |||||||| |  || || |||||||||||||||||||||||    
T  13303991 aatgacaccaacaacaatctttattatagaaaaagttgtttaaaggtataattgggataatgaaaaa 13303925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 773794 - 773723
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattg---aatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| || |||||||| |||||||||| ||||   || |||||||||||||||||||||||||    
T  773794 aatgacaccaacaacagtctttattatagaaaaaattattgtttaagggtataattgggataatgaaaaagt 773723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 24232255 - 24232194
Alignment:
Q  57 catcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaa 118  Q
    |||||||| |||| |||||| ||||||||||  || || |||||||||||||||||||||||    
T  24232255 catcaacaacaatttttattatagaaaaaattgtttaagggtataattgggataatgaaaaa 24232194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 7548474 - 7548414
Alignment:
Q  60 caacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||| ||||||||||| ||||||||||  || || ||||||||||||||| |||||||||    
T  7548474 caacaacaatctttattatagaaaaaattgtttaagggtataattgggatagtgaaaaagt 7548414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 11344987 - 11344919
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| |||||||| |  || ||  ||||||||||||||||||||||||    
T  11344987 aatgacaccaacaacaatctttattatagaaaaagttgtttaagagtataattgggataatgaaaaagt 11344919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 29689442 - 29689382
Alignment:
Q  60 caacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||| ||||||||||| ||||||||||  || || |||||||||| ||||||||||||||    
T  29689442 caacaacaatctttattatagaaaaaattgtttaagggtataattgagataatgaaaaagt 29689382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 34969365 - 34969433
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| ||||||||||  || ||  |||||||||| |||||||||||||    
T  34969365 aatgacaccaacaacaatctttattatagaaaaaattgtttaagagtataattggaataatgaaaaagt 34969433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 29716954 - 29716899
Alignment:
Q  60 caacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaa 115  Q
    ||||| ||||||||||| ||||||||||  || || ||||||||||||||||||||    
T  29716954 caacaacaatctttattatagaaaaaattgtttaagggtataattgggataatgaa 29716899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 1570266 - 1570328
Alignment:
Q  58 atcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||||||||| ||||||||||  || || | ||||||| |||||||||||||||    
T  1570266 atcaacaacaatctttattatagaaaaaattgtttaaggatataattaggataatgaaaaagt 1570328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 13057269 - 13057327
Alignment:
Q  60 caacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaa 118  Q
    ||||| ||||||||||| |||||||||| ||| || |||||||||| |||||| |||||    
T  13057269 caacaacaatctttattatagaaaaaattatttaaaggtataattgagataataaaaaa 13057327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 33326790 - 33326860
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagtta 122  Q
    ||||||| ||||| |||| |||||| |||||||| |  || ||  ||||||||||||||||||||||||||    
T  33326790 aatgacaccaacaacaatatttattatagaaaaagttgtttaagagtataattgggataatgaaaaagtta 33326860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 48995470 - 48995528
Alignment:
Q  60 caacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaa 118  Q
    ||||| ||||||||||| |||||||||| ||| || ||||||| ||| |||||||||||    
T  48995470 caacaacaatctttattatagaaaaaattatttaagggtataactggaataatgaaaaa 48995528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 47402821 - 47402890
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattg-aatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||| | ||||||||||| || ||||||| |||  || |||||||||||||||||||||||||    
T  47402821 aatgacaacaaaaacaatctttattatataaaaaattattttaagggtataattgggataatgaaaaagt 47402890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 115902 - 115970
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| || ||||| |  || |||| |||||||| ||||||||||||||    
T  115902 aatgacaccaacaacaatctttattatataaaaagttgtttaatgatataattgagataatgaaaaagt 115970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 8699329 - 8699261
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| ||||||||    || |||||||| ||| |||||||||||||||    
T  8699329 aatgacaccaacaacaatctttattatagaaaaaggtgtttaatggtatgattaggataatgaaaaagt 8699261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 10844279 - 10844347
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||||||| |  |||||||| ||||||||||  || || | ||||||| |||||||||||||||    
T  10844279 aatgacatcaacaacgttctttattatagaaaaaattgtttaaggatataattaggataatgaaaaagt 10844347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 13315250 - 13315310
Alignment:
Q  60 caacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||| ||||||||||| |||||||| |  || || |||||| ||||||||||||||||||    
T  13315250 caacaacaatctttattatagaaaaagttgtttaagggtatacttgggataatgaaaaagt 13315310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 18227001 - 18227069
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    |||||| |||||| |||||||| || |||||||| |  || || |||||||||| ||||||||||||||    
T  18227001 aatgacgtcaacaacaatctttgttatagaaaaagttgtttaaaggtataattgagataatgaaaaagt 18227069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 25298101 - 25298033
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| | ||||||||| |||||||| |  || || |||||||||| ||||||||||||||    
T  25298101 aatgacaccaacaacgatctttattatagaaaaatttgtttaaaggtataattgagataatgaaaaagt 25298033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 25822152 - 25822219
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||  ||||||||||| |||||||| ||||| ||  |||||||||||||| |||||||||    
T  25822152 aatgacaccaacgacaatctttattatagaaaaattgatt-aagtgtataattgggatagtgaaaaagt 25822219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 31528683 - 31528615
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| |||||||| |  || ||  ||||||||| ||||||||||||||    
T  31528683 aatgacaccaacaacaatctttattatagaaaaagttgtttaaatgtataattgagataatgaaaaagt 31528615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 43575683 - 43575735
Alignment:
Q  68 atctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||| |||||||| |  || || |||||||||||||||||||||||||    
T  43575683 atctttattatagaaaaatttgtttaagggtataattgggataatgaaaaagt 43575735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 46880109 - 46880041
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| |||||||||||  |||||||||  || || ||||||||||  |||||||||||||    
T  46880109 aatgacaccaacaacaatctttattacagaaaaaattgtttaagggtataattgacataatgaaaaagt 46880041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 52043426 - 52043358
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| |||||  |||||||||| |||||||| |  || || |||||||||| ||||||||||||||    
T  52043426 aatgacaccaacaaaaatctttattatagaaaaagttgtttaaaggtataattgagataatgaaaaagt 52043358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 14798 - 14730
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||||||| ||||||||||| ||||||||||  || || |||||| ||||| ||||||||||||    
T  14798 aatgacatcaacaacaatctttattatagaaaaaatcgtttaagggtatatttgggttaatgaaaaagt 14730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 17210615 - 17210547
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| ||||||||||  || || |||||||||| ||||||||||||||    
T  17210615 aatgacaccaacaacaatctttattatagaaaaaattgtttaagggtataattgagataatgaaaaagt 17210547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 5776547 - 5776604
Alignment:
Q  60 caacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaa 118  Q
    ||||| ||||||||||| |||||||| | ||| ||||||||||||||||||||||||||    
T  5776547 caacaacaatctttattatagaaaaatt-atttaatggtataattgggataatgaaaaa 5776604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 1612007 - 1612075
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| || || ||||||||||  ||||||||||  || || |||||||||||||||||||||||||    
T  1612007 aatgacaccagcaacaatctttataatagaaaaaattgtttaagggtataattgggataatgaaaaagt 1612075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 19650751 - 19650691
Alignment:
Q  60 caacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||| ||||||||||| |||||||| |  || || |||||||||||||||||||||||||    
T  19650751 caacaacaatctttattatagaaaaagttgtttaaaggtataattgggataatgaaaaagt 19650691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 36226516 - 36226448
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| |||||||| |  || || |||||||||| ||||||||||||||    
T  36226516 aatgacaccaacaacaatctttattatagaaaaagttgtttaagggtataattgagataatgaaaaagt 36226448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 38697021 - 38697089
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| ||||||||||  || || | |||||||||||||||| ||||||    
T  38697021 aatgacaccaacaacaatctttattatagaaaaaattgtttaaggatataattgggataatggaaaagt 38697089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 832230 - 832163
Alignment:
Q  53 atgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    |||||| ||||| ||||||||||| |||||||| |  || || ||||||||||||||||| |||||||    
T  832230 atgacaccaacaacaatctttattatagaaaaagttgtttaaaggtataattgggataataaaaaagt 832163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 36267166 - 36267099
Alignment:
Q  53 atgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    |||||| ||||| ||||||||||| |||||||||| ||| ||  |||||||||| ||||| |||||||    
T  36267166 atgacaccaacaacaatctttattgtagaaaaaattattcaaatgtataattggaataataaaaaagt 36267099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 12083037 - 12082987
Alignment:
Q  67 aatctttattctagaaaaaatgattgaatggtataattgggataatgaaaa 117  Q
    |||||||||| |||||||||| ||| || ||||| ||||||||||||||||    
T  12083037 aatctttattatagaaaaaattatttaagggtattattgggataatgaaaa 12082987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 24836814 - 24836748
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaa 118  Q
    ||||||| ||||| |||| |||||| ||||||||||  || ||  ||||||||||||||||||||||    
T  24836814 aatgacaccaacaacaatatttattatagaaaaaattgtttaagagtataattgggataatgaaaaa 24836748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 40716269 - 40716211
Alignment:
Q  60 caacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaa 118  Q
    ||||| ||||||||||| | ||||||||  || || |||||||||||||||||||||||    
T  40716269 caacaacaatctttattattgaaaaaattgtttaagggtataattgggataatgaaaaa 40716211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 8786729 - 8786797
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| |||||||| |  || || |||||||||| ||||||| ||||||    
T  8786729 aatgacaccaacaacaatctttattatagaaaaagttgtttaaaggtataattgagataatggaaaagt 8786797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 19128620 - 19128688
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| | ||||||||| |||||||| |  || || ||||||||||| |||||||||||||    
T  19128620 aatgacaccaacaacgatctttattatagaaaaagttgtttaagggtataattggaataatgaaaaagt 19128688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 28766340 - 28766280
Alignment:
Q  60 caacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||| ||||||||||| ||||||||||  || ||  |||||| |||||||||||||||||    
T  28766340 caacaacaatctttattatagaaaaaattgtttaagagtataactgggataatgaaaaagt 28766280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 42027669 - 42027737
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||||||| |  |||||||| ||||||||||  || ||  ||||||||| ||||||||||||||    
T  42027669 aatgacatcaacaacggtctttattatagaaaaaattgtttaagagtataattgagataatgaaaaagt 42027737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 4877 - 4811
Alignment:
Q  54 tgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||| ||||| ||||||||||| ||||||||||  || ||  ||||||||||||||||||||||||    
T  4877 tgacaccaacaacaatctttattatagaaaaaattgtttaaatgtataattgggataatgaaaaagt 4811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 1554821 - 1554755
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaa 118  Q
    ||||||| ||||| ||||||||||| |||||||| | ||| || ||||||||||||||||| |||||    
T  1554821 aatgacaccaacaacaatctttattatagaaaaagttatttaagggtataattgggataataaaaaa 1554755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 1170553 - 1170488
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaa 117  Q
    ||||||| ||||| ||||||||||| ||||||||   ||| || ||||||||||||||||||||||    
T  1170553 aatgacaccaacaacaatctttattgtagaaaaagctatttaagggtataattgggataatgaaaa 1170488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 4418449 - 4418384
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaa 117  Q
    ||||||||||||| ||||||||||| ||||||||||  || || |||||| ||||| |||||||||    
T  4418449 aatgacatcaacaacaatctttattatagaaaaaatcgtttaagggtatatttgggttaatgaaaa 4418384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 3739627 - 3739559
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||| ||||||| |||||||| |  || || |||||||||||||||||||||||||    
T  3739627 aatgacaccaacaacaacctttattatagaaaaagttgtttaaaggtataattgggataatgaaaaagt 3739559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 4437874 - 4437926
Alignment:
Q  68 atctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||| ||||||||||  || |||| |||||||||||||||||||||||    
T  4437874 atctttattatagaaaaaattgtttaatgatataattgggataatgaaaaagt 4437926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 33192561 - 33192613
Alignment:
Q  68 atctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||| |||||||||| ||| ||  ||||||||||||||||||||||||    
T  33192561 atctttattatagaaaaaattatttaagagtataattgggataatgaaaaagt 33192613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 18918341 - 18918411
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatg--gtataattgggataatgaaaaagt 120  Q
    ||||||||||||| | ||||||||| ||||||||||  || || |  ||||||||||||||||||||||||    
T  18918341 aatgacatcaacaacgatctttattatagaaaaaattgtttaaaggtgtataattgggataatgaaaaagt 18918411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 120
Target Start/End: Original strand, 30800645 - 30800684
Alignment:
Q  81 aaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  30800645 aaaaaatgatttaagggtataattgggataatgaaaaagt 30800684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 38283697 - 38283643
Alignment:
Q  66 caatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||||| |||||||||| ||| ||   |||||||||||||||||||||||    
T  38283697 caatctttattatagaaaaaattatttaacaatataattgggataatgaaaaagt 38283643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 38498548 - 38498482
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaa 118  Q
    ||||||| ||||| ||||||||||| |||||||| |  || || ||||||||||||||||| |||||    
T  38498548 aatgacaccaacaacaatctttattgtagaaaaagttgtttaagggtataattgggataataaaaaa 38498482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 5049734 - 5049702
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaa 84  Q
    ||||||||||||||||||||||||| |||||||    
T  5049734 aatgacatcaacaccaatctttattatagaaaa 5049702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 11929657 - 11929717
Alignment:
Q  60 caacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||| ||||||||||  ||||||||||  || || |||||||||| ||||||||||||||    
T  11929657 caacaacaatctttatcatagaaaaaattgtttaagggtataattgtgataatgaaaaagt 11929717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 15872095 - 15872155
Alignment:
Q  60 caacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||| ||||||||||| |||||||| |  || || ||||||||||||||| |||||||||    
T  15872095 caacaacaatctttattatagaaaaagttgtttaaaggtataattgggatagtgaaaaagt 15872155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 15919571 - 15919639
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| || |||||||| |||| ||| |  || || |||||||||||||||||||||||||    
T  15919571 aatgacaccaacaacattctttattatagagaaagttgtttaagggtataattgggataatgaaaaagt 15919639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 24023984 - 24024036
Alignment:
Q  68 atctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||| ||||||||||  || || ||||||||| |||||||||||||||    
T  24023984 atctttattatagaaaaaattgtttaagggtataatttggataatgaaaaagt 24024036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 24688660 - 24688608
Alignment:
Q  68 atctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||| ||||||||||  || || |||||||||| ||||||||||||||    
T  24688660 atctttattatagaaaaaattgtttaaaggtataattgagataatgaaaaagt 24688608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 25722847 - 25722779
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| |||||||| |  || || ||||||||| ||||||| |||||||    
T  25722847 aatgacaccaacaacaatctttattatagaaaaagttgtttaaaggtataattaggataatcaaaaagt 25722779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 27020517 - 27020585
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| | ||||||||| |||||||| |  || || |||||||||| ||||||||||||||    
T  27020517 aatgacaccaacaacgatctttattgtagaaaaagttgtttaagggtataattgagataatgaaaaagt 27020585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 29684283 - 29684215
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| | ||||||||| |||||||| |  || ||  ||||||||||||||||||||||||    
T  29684283 aatgacaccaacaacgatctttattatagaaaaagttgtttaaaagtataattgggataatgaaaaagt 29684215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 32173037 - 32172985
Alignment:
Q  68 atctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||| ||||||||||  |  ||||||||||||| ||||||||||||||    
T  32173037 atctttattatagaaaaaattgtaaaatggtataattgagataatgaaaaagt 32172985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 34966748 - 34966680
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| |||||  |||||||||| |||||||| |  || || |||||||||| ||||||||||||||    
T  34966748 aatgacaccaacaaaaatctttattatagaaaaagttgtttaagggtataattgagataatgaaaaagt 34966680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 41942505 - 41942573
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| | ||| ||||||||||| |||||||| |  || || |||||||||| ||||||||||||||    
T  41942505 aatgacacccacaacaatctttattatagaaaaagttgtttaagggtataattgagataatgaaaaagt 41942573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 21104592 - 21104539
Alignment:
Q  66 caatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||||| |||||||| | ||| ||||||||||||||||||||||||||||    
T  21104592 caatctttattatagaaaaatt-atttaatggtataattgggataatgaaaaagt 21104539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 28712008 - 28712076
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| |||||||| |  || || |||||||||| ||||||||||||||    
T  28712008 aatgacaccaacaacaatctttattatagaaaaagttgtttaagggtataattgagataatgaaaaagt 28712076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 31204087 - 31204155
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||||| ||| |||||||||||  |||||||||  || |||||||||| || ||||||||||||||    
T  31204087 aatgacatcgacaacaatctttatttgagaaaaaattgtttaatggtataaatgagataatgaaaaagt 31204155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 8771737 - 8771805
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| |||||  |||||||||| ||||||||||  || || ||||||||||| ||||| |||||||    
T  8771737 aatgacaccaacaataatctttattatagaaaaaattgttcaagggtataattggaataataaaaaagt 8771805  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 17353154 - 17353087
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| |||||||| |  || ||| |||||||||||||||| |||||||    
T  17353154 aatgacaccaacaacaatctttattatagaaaaagttgttaaat-gtataattgggataataaaaaagt 17353087  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 20715882 - 20715814
Alignment:
Q  52 aatgacatcaacaccaatctttattctag-aaaaaatgattgaatggtataattgggataatgaaaaag 119  Q
    ||||||| ||||| ||||||||||| ||| |||||||  || || |||||||||| |||||||||||||    
T  20715882 aatgacaccaacaacaatctttattatagaaaaaaattgtttaagggtataattgagataatgaaaaag 20715814  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 22535486 - 22535554
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||| | ||||||||||| ||||| ||||  || || | |||||||||||||||||||||||    
T  22535486 aatgacaccaaaaacaatctttattatagaataaattgtttaaggatataattgggataatgaaaaagt 22535554  T

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Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 41569 - 41638
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaa-tgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| ||||||||||| ||||||||| |  || || |||||||||||||||||||||||||    
T  41569 aatgacaacaacaacaatctttattatagaaaaaagttgtttaagggtataattgggataatgaaaaagt 41638  T

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Target: scaffold0196 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 8725 - 8793
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||| ||||||| ||||||||||| ||||||||||  || || |||||||||||||| || |||||||    
T  8725 aatgaaatcaacaacaatctttattatagaaaaaattgtttaaaggtataattgggatcataaaaaagt 8793  T

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Target: scaffold0196; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 8217 - 8285
Alignment:
Q  52 aatgacatcaacaccaatctttattctagaaaaaatgattgaatggtataattgggataatgaaaaagt 120  Q
    ||||||| ||||| |||||||| |  ||||||||||  ||  | |||||||||||||||||||||||||    
T  8217 aatgacaccaacaacaatctttttattagaaaaaattgttttaaggtataattgggataatgaaaaagt 8285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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