View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13951_low_3 (Length: 517)
Name: NF13951_low_3
Description: NF13951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13951_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Complemental strand, 27588158 - 27587658
Alignment:
| Q |
1 |
tgatttgagccttcctgagctcctgtttgtattggtcacctcttgaaaggcaccaattgcatctaaatggtatttaagtttaaatgaaaacattaatacg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27588158 |
tgatttgagccttcctgagctcctgtttgtattggtcacctcttgaaaggcaccaattgcatctaaatggtatttcagtttaaatgaaaacattaatacg |
27588059 |
T |
|
| Q |
101 |
tctaaaaatagaaatagaaatatatgttttaaatgatatactaacccactattagatctggtctgtacttcccaacaagaacatcttcaaaatccttaaa |
200 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27588058 |
tctaaaaatagaaattgatatatatgttttaaatgatatactaacccactattagatctggtctgtacttcccagcaagaacatcttcaaaatccttaaa |
27587959 |
T |
|
| Q |
201 |
acagaaccttgccaaaggaattgcaggaaaatcttctggtgtaatgacagtagctccggtgacaattagccgatatggatgaggagttgccttcacaaca |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27587958 |
acagaaccctgccaaaggaattgcaggaaaatcttctggtgtaatgacagtagctccggtgacaattagccgatatggatgaggagttgccttcacaaca |
27587859 |
T |
|
| Q |
301 |
atttcattttttcaaaccttaaagttttccatttcaagagtgttattcaagtacaaaatctgcttaaactctgccacaaattccttagggacagtcacct |
400 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27587858 |
atttcatttttgcaaaccttaaagttttccatttcaagagtgttattcaagtacataatctgcttaaactctgccacaaatttcttagggacagtcacct |
27587759 |
T |
|
| Q |
401 |
gaatcctaccactctgcgatttaaatcagtgaaaacatcaacgatccatgataacaaatgtatataatgttaacaaatgtatcataaatataatacctga |
500 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27587758 |
gaatcctaccactctgcaatttaaatcagtgaaaacatcaacgatccatgataacaaatgtatataatgttaacaaatgtatcataaatataatacctga |
27587659 |
T |
|
| Q |
501 |
g |
501 |
Q |
| |
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| |
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| T |
27587658 |
g |
27587658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Complemental strand, 23041791 - 23041302
Alignment:
| Q |
1 |
tgatttgagccttcctgagctcctgtttgtattggtcacctcttgaaaggcaccaattgcatctaaatggtatttaagtttaaatgaaaacattaatacg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23041791 |
tgatttgagccttcctgagctcctgtttgtattggtcacctcttgaaaggcaccaattgcatctaaatggtatttcagtttaaatgaaaacattaatacg |
23041692 |
T |
|
| Q |
101 |
tctaaaaatagaaatagaaatatatgttttaaatgatatactaacccactattagatctggtctgtacttcccaacaagaacatcttcaaaatccttaaa |
200 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23041691 |
tctaaaaatagaaattgaaatatatgttttaaatgatatactaacccactattagatctggtctgtacttcccagcaagaacatcttcaaaatccttaaa |
23041592 |
T |
|
| Q |
201 |
acagaaccttgccaaaggaattgcaggaaaatcttctggtgtaatgacagtagctccggtgacaattagccgatatggatgaggagttgccttcacaaca |
300 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23041591 |
acagaaccctgccaaaggaattgcaggaaaatcttatggtgtaatgacagtagctccggtgacaattagccgatatggatgaggagttgccttcacaaca |
23041492 |
T |
|
| Q |
301 |
atttcattttttcaaaccttaaagttttccatttcaagagtgttattcaagtacaaaatctgcttaaactctgccacaaattccttagggacagtcacct |
400 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
23041491 |
atttcatttttgcaaaccttaaagttttccatttcaagagtgttattcaagtacaaaat-----------ctgcctcaaattccttagggacagtcacct |
23041403 |
T |
|
| Q |
401 |
gaatcctaccactctgcgatttaaatcagtgaaaacatcaacgatccatgataacaaatgtatataatgttaacaaatgtatcataaatataatacctga |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23041402 |
gaatcctaccactctgcgatttaaatcagtgaaaacatcaacgatccatgataacaaatgtatataatgttaacaaatgtatcataaatataatacctga |
23041303 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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