View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13951_low_5 (Length: 403)
Name: NF13951_low_5
Description: NF13951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13951_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 20 - 403
Target Start/End: Complemental strand, 5970981 - 5970599
Alignment:
| Q |
20 |
aagcttgaacatgctcatgaggatctttgagtgcatttgctctatcaacaatgatttagtcatgccaacaaagaagcataacaacacatcttctaattat |
119 |
Q |
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| T |
5970981 |
aagcttgaacatgctcatgaggatctttgagtgcatttgctctatcaacaatgatttagtcatgccaacaaagaagcataacaacacatcttctaattat |
5970882 |
T |
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| Q |
120 |
gtataatcttcctttttgctctttgagataccctcctagctttttggatgacaccttcttctttgaacctctcatatttgaatcactactactcctcatc |
219 |
Q |
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| T |
5970881 |
gtataatcttcccttttgctctttgagatagcctcctagctttttggatgacaccttcttctttgaacctctcatatttgaatcactactactcctcatc |
5970782 |
T |
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| Q |
220 |
tttgaatattataccaaaaagaaaaagacttgaaactcttttttgtattctccttttgtgtgtgagtgttgaatattgttgaaaagttggaactccttga |
319 |
Q |
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||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5970781 |
tttgaatattataccaaaaag-aaaagacttcaaactcttttttgtattctccttttgtgtgtgagtgttgaatattgttgaaaagttggaactccttga |
5970683 |
T |
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| Q |
320 |
agaagtgtttgttgatgagggctctaaaaggggttcttatatagagaaaagaaatgtgggccatagtacaaaataaaatgtcga |
403 |
Q |
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| T |
5970682 |
agaagtgtttgttgatgagggctctaaaaggggttcttatatagagaaaagaaatgtggtccatagtacaaaataaaatgtcga |
5970599 |
T |
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