View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13951_low_6 (Length: 381)
Name: NF13951_low_6
Description: NF13951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13951_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 118 - 365
Target Start/End: Complemental strand, 28329018 - 28328771
Alignment:
| Q |
118 |
aattatattttggcaggatttattttttgctgggattgacacagcatcaaacacgattgaatggactatggcagagctattacgtaaccctggcaaacta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28329018 |
aattatattttggcaggatttattttttgctgggattgacacaacatcaaacacgattgaatggactatggcagagctattacgtaaccctggcaaacta |
28328919 |
T |
|
| Q |
218 |
gataaagcaagaaaagaattatgtcaagtaatgggaaaagatgaaactgttgaagaatcaaatatttccaagttaccttacttacaagcagttgtgaagg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28328918 |
gataaagcaagaaaagaattatgtcaagtaatgggaaaagatgaagcaatagaagaatcaaatatttccaagttaccttacttacaagcagttgtgaagg |
28328819 |
T |
|
| Q |
318 |
aaacccttcgattgcacccaccagctccattatcgataccccgcaaat |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28328818 |
aaacccttcgattgcacccaccagctccattatcgataccccgcaaat |
28328771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 132 - 350
Target Start/End: Complemental strand, 28296325 - 28296107
Alignment:
| Q |
132 |
aggatttattttttgctgggattgacacagcatcaaacacgattgaatggactatggcagagctattacgtaaccctggcaaactagataaagcaagaaa |
231 |
Q |
| |
|
||||||| ||| ||||||| ||||||||| |||||| |||||||||||||| |||||| ||||||||||||||||||| |||| || |||| |||||| |
|
|
| T |
28296325 |
aggatttgtttgttgctggtattgacacaacatcaagcacgattgaatggattatggcggagctattacgtaaccctgacaaattaacaaaagtaagaaa |
28296226 |
T |
|
| Q |
232 |
agaattatgtcaagtaatgggaaaagatgaaactgttgaagaatcaaatatttccaagttaccttacttacaagcagttgtgaaggaaacccttcgattg |
331 |
Q |
| |
|
|| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28296225 |
ggagttatgtcaagcaattggaaaagatgaaactgttgaagaatcaaatatttccaagttaccttacttacaagcagttgtgaaggaaacccttcggttg |
28296126 |
T |
|
| Q |
332 |
cacccaccagctccattat |
350 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28296125 |
cacccaccagctccattat |
28296107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 132 - 359
Target Start/End: Original strand, 28290641 - 28290868
Alignment:
| Q |
132 |
aggatttattttttgctgggattgacacagcatcaaacacgattgaatggactatggcagagctattacgtaaccctggcaaactagataaagcaagaaa |
231 |
Q |
| |
|
||||||||||| |||||||||||||||| | |||| ||| |||||||||| |||| ||||||| |||| |||||| |||| | |||||||||| |
|
|
| T |
28290641 |
aggatttatttgctgctgggattgacacaacttcaagcacaattgaatggatcatggtagagctactacgcaaccctagcaatatgacaaaagcaagaac |
28290740 |
T |
|
| Q |
232 |
agaattatgtcaagtaatgggaaaagatgaaactgttgaagaatcaaatatttccaagttaccttacttacaagcagttgtgaaggaaacccttcgattg |
331 |
Q |
| |
|
|||||||| | |||| || || |||||||||| ||||||||||| |||||| ||||| |||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
28290741 |
agaattatctaaagttattggtaaagatgaaataattgaagaatcagatatttttaagttgcctttcttacaagcagttgtgaaggaaacctttcgattg |
28290840 |
T |
|
| Q |
332 |
cacccaccagctccattatcgatacccc |
359 |
Q |
| |
|
|| |||||||||||||||| | |||||| |
|
|
| T |
28290841 |
catccaccagctccattattggtacccc |
28290868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 132 - 350
Target Start/End: Complemental strand, 28320158 - 28319940
Alignment:
| Q |
132 |
aggatttattttttgctgggattgacacagcatcaaacacgattgaatggactatggcagagctattacgtaaccctggcaaactagataaagcaagaaa |
231 |
Q |
| |
|
|||| |||||| ||||||||||||||||| |||||| || |||||||||| ||| ||||||||| ||||||| |||| |||| || |||| |||||| |
|
|
| T |
28320158 |
aggacttatttgttgctgggattgacacaacatcaagcataattgaatggattattgcagagctactacgtaatcctgacaaattaacaaaagtaagaaa |
28320059 |
T |
|
| Q |
232 |
agaattatgtcaagtaatgggaaaagatgaaactgttgaagaatcaaatatttccaagttaccttacttacaagcagttgtgaaggaaacccttcgattg |
331 |
Q |
| |
|
||| ||||||||| ||| || |||| |||||| ||||||||||| | |||| ||||||||||| |||||||||||||||||| |||||| || | ||| |
|
|
| T |
28320058 |
agagttatgtcaaacaattggcaaaggtgaaaccattgaagaatcacacattttcaagttacctttcttacaagcagttgtgaaagaaacctttaggttg |
28319959 |
T |
|
| Q |
332 |
cacccaccagctccattat |
350 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
28319958 |
cacccaccaattccattat |
28319940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 185 - 365
Target Start/End: Complemental strand, 28307270 - 28307090
Alignment:
| Q |
185 |
atggcagagctattacgtaaccctggcaaactagataaagcaagaaaagaattatgtcaagtaatgggaaaagatgaaactgttgaagaatcaaatattt |
284 |
Q |
| |
|
||||||||||||||| |||| |||| ||| ||| |||||||||||||| |||||| ||| ||| || ||||||||||| ||||||||||| |||||| |
|
|
| T |
28307270 |
atggcagagctattaggtaatcctgaaaaattagcaaaagcaagaaaagagttatgtaaagaaattggtaaagatgaaacaattgaagaatcacatattt |
28307171 |
T |
|
| Q |
285 |
ccaagttaccttacttacaagcagttgtgaaggaaacccttcgattgcacccaccagctccattatcgataccccgcaaat |
365 |
Q |
| |
|
||| |||||| | ||||||||||| |||||||||||| || | |||||||| |||||||||||| | |||||| ||||| |
|
|
| T |
28307170 |
ccatgttaccatttttacaagcagtggtgaaggaaacctttaggttgcaccccgcagctccattattgctaccccacaaat |
28307090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 134 - 348
Target Start/End: Complemental strand, 28303499 - 28303284
Alignment:
| Q |
134 |
gatttattttttgctgggattgacacagcatcaaacacgattgaatggactatggcagagctattacgtaaccctggcaaactagataaagc-aagaaaa |
232 |
Q |
| |
|
||||||||| |||| |||||||||||| |||||| |||||||| ||| ||||||||||||| || ||||||| || | || | ||| | ||||||| |
|
|
| T |
28303499 |
gatttatttgttgccgggattgacacatcatcaaggacgattgagtgggttatggcagagctactatgtaacccaaacacattaaaaaaaaccaagaaaa |
28303400 |
T |
|
| Q |
233 |
gaattatgtcaagtaatgggaaaagatgaaactgttgaagaatcaaatatttccaagttaccttacttacaagcagttgtgaaggaaacccttcgattgc |
332 |
Q |
| |
|
|| |||||| ||| ||| || ||||||||||| ||||||||||| ||| | ||||| |||| |||||||| |||||||||||||| ||||| |||| |
|
|
| T |
28303399 |
gagttatgtgaagcaattggtaaagatgaaacaattgaagaatcacatacatttaagttgccttttttacaagcggttgtgaaggaaactcttcggttgc |
28303300 |
T |
|
| Q |
333 |
acccaccagctccatt |
348 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28303299 |
acccaccagctccatt |
28303284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 340
Target Start/End: Original strand, 28317067 - 28317150
Alignment:
| Q |
257 |
gatgaaactgttgaagaatcaaatatttccaagttaccttacttacaagcagttgtgaaggaaacccttcgattgcacccacca |
340 |
Q |
| |
|
|||||||| |||| ||||| |||||| ||||||||||| |||||||||| |||||||| |||| || ||||||| |||||| |
|
|
| T |
28317067 |
gatgaaaccattgaggaatctcatatttacaagttacctttcttacaagcaattgtgaagaaaactattggattgcatccacca |
28317150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University