View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13951_low_7 (Length: 369)
Name: NF13951_low_7
Description: NF13951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13951_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 10 - 351
Target Start/End: Original strand, 14812581 - 14812918
Alignment:
| Q |
10 |
acatcatcaccttgtcaagaataatttccacactacttcgttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
109 |
Q |
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| T |
14812581 |
acatcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
14812680 |
T |
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| Q |
110 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatatcatacttatctt |
209 |
Q |
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| T |
14812681 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatac--tatcatatttatctt |
14812778 |
T |
|
| Q |
210 |
tcatgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacatagagattcactac |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
14812779 |
tcatgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaac--agagattcgctac |
14812876 |
T |
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| Q |
310 |
tttctgtattgtaaggagtccattaggatatgtagagaaaat |
351 |
Q |
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| T |
14812877 |
tttctgtattgtaaagagtccattaggatatgtagagaaaat |
14812918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 10 - 351
Target Start/End: Original strand, 15259576 - 15259913
Alignment:
| Q |
10 |
acatcatcaccttgtcaagaataatttccacactacttcgttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
109 |
Q |
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| T |
15259576 |
acatcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
15259675 |
T |
|
| Q |
110 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatatcatacttatctt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
15259676 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatac--tatcatatttatctt |
15259773 |
T |
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| Q |
210 |
tcatgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacatagagattcactac |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
15259774 |
tcatgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaac--agagattcgctac |
15259871 |
T |
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| Q |
310 |
tttctgtattgtaaggagtccattaggatatgtagagaaaat |
351 |
Q |
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| T |
15259872 |
tttctgtattgtaaagagtccattaggatatgtagagaaaat |
15259913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 351
Target Start/End: Complemental strand, 17521599 - 17521262
Alignment:
| Q |
10 |
acatcatcaccttgtcaagaataatttccacactacttcgttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
109 |
Q |
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|||||| |||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521599 |
acatcaccaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
17521500 |
T |
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| Q |
110 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatatcatacttatctt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
17521499 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatac--tatcatatttatctt |
17521402 |
T |
|
| Q |
210 |
tcatgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacatagagattcactac |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
17521401 |
tcatgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaac--agagattcgctac |
17521304 |
T |
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| Q |
310 |
tttctgtattgtaaggagtccattaggatatgtagagaaaat |
351 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17521303 |
tttctgtattgtaaagagtccattaggatatgtagagaaaat |
17521262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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