View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13951_low_8 (Length: 348)
Name: NF13951_low_8
Description: NF13951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13951_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 62 - 333
Target Start/End: Original strand, 27441051 - 27441322
Alignment:
| Q |
62 |
gtttagcacatgatatttgtccttaacaaattatataaatttgaaaacacaagaaatcaaataattattttccacgttcaaaaccatgttgggaacatct |
161 |
Q |
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| T |
27441051 |
gtttagcacatgatatttgtccttaacaaattatataaatttgaaaacacaagaaatcaaataattattttccatgttcaaaaccatgttgggaacatct |
27441150 |
T |
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| Q |
162 |
aaatcacgttagcacatgtttatacttgaagatgctggtatatatttagacaaacaatcataaatctattgaaaactcaatatctcatttccattcatgt |
261 |
Q |
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| T |
27441151 |
aaatcacgttagcacatgtttatacttgaagatgctggtttatatttagacaaacaatcataaatctattgaaaactcaatatctcatttccattcatgt |
27441250 |
T |
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| Q |
262 |
aggttatgaggtgcaatcaattcattaccactagttactagaagtgaataagacaaaagtatacattgtctt |
333 |
Q |
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| T |
27441251 |
aggttatgaggtgcaatcaattcattaccactagttactagaagtgaataagacaaaagtatacattgtctt |
27441322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 27440999 - 27441037
Alignment:
| Q |
11 |
ttctatgcgaataaaacgtattgtttagtgctgaatttt |
49 |
Q |
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| T |
27440999 |
ttctatacgaatcaaacgtattgtttagtgctgaatttt |
27441037 |
T |
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