View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13952_high_1 (Length: 505)
Name: NF13952_high_1
Description: NF13952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13952_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 473
Target Start/End: Original strand, 6112599 - 6113068
Alignment:
| Q |
9 |
agggacatagacttattatgattatgaaaagaaaaacttacatatcaagttttctgagattgaaggaatgagaaacaagtctagaggtggaatcatcatc |
108 |
Q |
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| T |
6112599 |
agggacatacaattattatgattatgaaaagaaaaacttacatatcaagttttctgagattgtaggcatgagaaacaagtctagaggtggaatcatcatc |
6112698 |
T |
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| Q |
109 |
cattttccaaccagcaaaactaagattctgtctccttgccaaagattccttcaccccttgttgccatttcttgcaaaccttggttgccctttttcaaaac |
208 |
Q |
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| T |
6112699 |
cattttccaaccagcaaaactaagattctgtctccttgccaaagattccttcaccccttgtttccatttcttgcaaaccttgcttgccctttttcaaaac |
6112798 |
T |
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| Q |
209 |
catacaaaatatatataccacaaacattaattaatgaaag-------nnnnnnnncttttatatagtttgattcannnnnnngtgtgacaannnnnnnat |
301 |
Q |
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| T |
6112799 |
catacaaaatatatataccacaaacattaattaatgaaagaaagaaaaaaaaaaactttcatatagtatgattcattttttt-tgtgacaatttttttat |
6112897 |
T |
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| Q |
302 |
atagtatcatgattcatacaagtgaatatacttactgggccaaatcagtgaaggaagtgaatagaacaaaaatatgagccaacaagtcaataggcaaacg |
401 |
Q |
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| T |
6112898 |
atagtatcatgattcatacaagtgaatatacttactgggccaaatcagtgaaggaagtgaatagaacaaaaatatgagccaacaagtcaataggcaaacg |
6112997 |
T |
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| Q |
402 |
atcaatctcagcctcaagttccataaagaagattctcttgattcaccacttacaaaataaagcaaattaaat |
473 |
Q |
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| T |
6112998 |
atcaatctcagcctcaagttccataaagaagattctcttgattcaccactcacaaaa-aaagcaaattaaat |
6113068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 6123234 - 6123274
Alignment:
| Q |
21 |
ttattatgattatgaaaagaaaaacttacatatcaagtttt |
61 |
Q |
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| T |
6123234 |
ttattataatcatgaaaagaaaaacttacatatcaagtttt |
6123274 |
T |
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