View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13952_high_4 (Length: 332)
Name: NF13952_high_4
Description: NF13952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13952_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 47256153 - 47255837
Alignment:
| Q |
1 |
tccaccattggaccagatcaatattagaaagcttgaaaattatcatgtattaacttgacggaatcattccatctcattataatcattttggaatttcgct |
100 |
Q |
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| T |
47256153 |
tccaccattggaccagatcaatattagaaagctcgaaaattatcatgtattaacttgacggaatcattccatctcattataatcattttggaatttcgct |
47256054 |
T |
|
| Q |
101 |
agaaattaatttttcaaagtcacatacttaagagacctataaaatttcaaggatgtttgtttttatcattaaacttcaaggatgtgagaattattataat |
200 |
Q |
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| T |
47256053 |
agaaattaaattttcaaagtcacatacttaagagacctataaaatttcaaggatgtttgtttttatcaataaacttcaaggatgtgagaattattataat |
47255954 |
T |
|
| Q |
201 |
aagacctgtatgagtcggatgggacggtcaataatatattctgagcctggaacatcacatagaatttcttggaagcaaggaaatggaggttgcagagcat |
300 |
Q |
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| T |
47255953 |
aagacctgtataagtcggatgggacggtcaataatatattctgagcctggaacatcacatagaatttcttggaagcaaggaaatggaggttgcagagcat |
47255854 |
T |
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| Q |
301 |
caccaaattgatcaagt |
317 |
Q |
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||||||||||||||||| |
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| T |
47255853 |
caccaaattgatcaagt |
47255837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 175 - 317
Target Start/End: Complemental strand, 47241027 - 47240885
Alignment:
| Q |
175 |
ttcaaggatgtgagaattattataataagacctgtatgagtcggatgggacggtcaataatatattctgagcctggaacatcacatagaatttcttggaa |
274 |
Q |
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||||||||||||||| |||||||||| |||||||||||||| |||| |||||||||||||| |||||||||||||||||| ||| | || |||||| |
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| T |
47241027 |
ttcaaggatgtgagagttattataattggacctgtatgagtcaaatggtacggtcaataatatgttctgagcctggaacatcgtataagagttgttggaa |
47240928 |
T |
|
| Q |
275 |
gcaaggaaatggaggttgcagagcatcaccaaattgatcaagt |
317 |
Q |
| |
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|||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
47240927 |
gcaagggaatggaggatgcagagcatcaccaaattgatcaagt |
47240885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 204 - 317
Target Start/End: Original strand, 47300787 - 47300900
Alignment:
| Q |
204 |
acctgtatgagtcggatgggacggtcaataatatattctgagcctggaacatcacatagaatttcttggaagcaaggaaatggaggttgcagagcatcac |
303 |
Q |
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|||||||||||||| ||||||||||| ||||| | ||| |||||| |||||||| |||| | || ||||||||||| |||||||| ||||| ||||||| |
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| T |
47300787 |
acctgtatgagtcgaatgggacggtccataatttgttccgagcctcgaacatcatataggagttgatggaagcaagggaatggaggatgcagggcatcac |
47300886 |
T |
|
| Q |
304 |
caaattgatcaagt |
317 |
Q |
| |
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|||||||||||||| |
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| T |
47300887 |
caaattgatcaagt |
47300900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 47296210 - 47296308
Alignment:
| Q |
219 |
atgggacggtcaataatatattctgagcctggaacatcacatagaatttcttggaagcaaggaaatggaggttgcagagcatcaccaaattgatcaagt |
317 |
Q |
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|
||||||||||| ||||| | | |||||||||||||||| |||| | || |||||||||||| |||||||| ||||| ||||||||||||||||||||| |
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| T |
47296210 |
atgggacggtcgataatttgtgttgagcctggaacatcatataggagttgttggaagcaagggaatggaggatgcagggcatcaccaaattgatcaagt |
47296308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 47264994 - 47264882
Alignment:
| Q |
204 |
acctgtatgagtcggatgggacggtcaataatatattctgagcctggaacatcacatagaatttcttggaagcaaggaaatggaggttgcagagcatcac |
303 |
Q |
| |
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|||||||||||||| ||||||||||||||||| ||| || ||||||||||| |||||| ||||| |||||| || | ||| || |||| ||| |||| |
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| T |
47264994 |
acctgtatgagtcgaatgggacggtcaataattagttccgatcctggaacatcgtatagaagttcttcgaagcatgggagtgggggatgcaaagcgtcac |
47264895 |
T |
|
| Q |
304 |
caaattgatcaag |
316 |
Q |
| |
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| |||| |||||| |
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|
| T |
47264894 |
cgaattcatcaag |
47264882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 47275521 - 47275449
Alignment:
| Q |
245 |
gcctggaacatcacatagaatttcttggaagcaaggaaatggaggttgcagagcatcaccaaattgatcaagt |
317 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||||| ||||| || ||||| ||||||||||||| ||||||| |
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| T |
47275521 |
gcctggaacatcgtatatgagttcttggaagcaagggaatgggggatgcagtgcatcaccaaattcatcaagt |
47275449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 309
Target Start/End: Complemental strand, 47282259 - 47282198
Alignment:
| Q |
248 |
tggaacatcacatagaatttcttggaagcaaggaaatggaggttgcagagcatcaccaaatt |
309 |
Q |
| |
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|||||||||| ||| | ||||||||||||||| ||||| || || |||||||||||||||| |
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| T |
47282259 |
tggaacatcatatatgagttcttggaagcaagggaatgggggatgaagagcatcaccaaatt |
47282198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 168 - 317
Target Start/End: Complemental strand, 32729699 - 32729550
Alignment:
| Q |
168 |
attaaacttcaaggatgtgagaattattataataagacctgtatgagtcggatgggacggtcaataatatattctgagcctggaacatcacatagaattt |
267 |
Q |
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|||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| | || |
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| T |
32729699 |
attaaatttcaaggatgtgagagttattataattggacctgtatgagtcgaatgggacggtcaataatatgttctgagcctggaacatcgtataagagtt |
32729600 |
T |
|
| Q |
268 |
cttggaagcaaggaaatggaggttgcagagcatcaccaaattgatcaagt |
317 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
32729599 |
gttggaagcaagggaatggaggatgcagagcatcaccaaattgatcaagt |
32729550 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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