View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13952_high_6 (Length: 243)
Name: NF13952_high_6
Description: NF13952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13952_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 52726384 - 52726620
Alignment:
| Q |
7 |
ttctatagggggatggggtgccaatatcagtgattatttatacattctatctaaaaaagcaaaagactccaagtttttcctatgtcaccatttggtggtg |
106 |
Q |
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| T |
52726384 |
ttctatagggggatggggtgccattatcagtgattatttatacattctatctaaaaaagcaaaagactccaagtttttcctatgtcaccatttggtggtg |
52726483 |
T |
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| Q |
107 |
acggattttaggccacaaaacagcagggccacatagatatactattccataattttcaacaagacaaaggcatgaagttactgtcaagaaaaggcatgaa |
206 |
Q |
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| T |
52726484 |
acggattttaggccacaaaacagcagggccacatagatatactatgccataattttcaacaagacaaaggcatgaagttactgtcaagaaaaggcatgaa |
52726583 |
T |
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| Q |
207 |
gcttatttacagcagagccaaagcatgataattatac |
243 |
Q |
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| T |
52726584 |
gcttatttacagcagagccaaagcatgataattatac |
52726620 |
T |
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