View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13952_low_2 (Length: 502)
Name: NF13952_low_2
Description: NF13952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13952_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Complemental strand, 48749823 - 48749345
Alignment:
| Q |
19 |
ataagaatggaaagtttacaacagagacggtataatttgtctttattattc-ggttacgtcatctatatttcatttttattttaagcacacaaatttcgt |
117 |
Q |
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| T |
48749823 |
ataagaatggaaagtttacaacagagacggtataatttgtctttattattccggttacgtcatctat--ttcatttttattttaagcacacaaatttcgt |
48749726 |
T |
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| Q |
118 |
tacgcagtcatacacttttctgtttacttgcttctcactactactcatcaaccataattacttccttttttctcaagctcaaaatcattcataagtcata |
217 |
Q |
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| T |
48749725 |
tacgcagtcatacactgttctgtttacttgcttctcactactactcatcaaccataattacttccttttttctcaagctcaaaatcattcataagtcata |
48749626 |
T |
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| Q |
218 |
acaccaaagattataacaaattattaatttcagtcagattataacaaatttatctcatcttaaatttacacttcccgaatcatgg--------------- |
302 |
Q |
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| T |
48749625 |
acaccaaagattataagaaattattaatt----tcagattataacaaatttatctcatcttaaatttacacttcccgaatcatggaagaaaatagataaa |
48749530 |
T |
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| Q |
303 |
---aagaaaataaaaacaaattatgttactgactcactctgttcttctgtttccatttcttctttctctgatttctcaacagtttcatggttttcgcgtt |
399 |
Q |
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| T |
48749529 |
attaagaaaataaaaacaaattatgttactgactgactctgttcttctgtttccatttcttctttctctgatttctcaacagtttcatggttttcgcgtt |
48749430 |
T |
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| Q |
400 |
gttcatccgagtgattcgcatctagattcataacagaagatgattttggaaaaacaggtgtagctaaaaacgttgggttctgatc |
484 |
Q |
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| T |
48749429 |
gttcatccgagtgattcgcatctagattcataacagaagatgattttggaaaaacaggtgtagctaaaaacgttgggttctgatc |
48749345 |
T |
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