View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13952_low_3 (Length: 480)
Name: NF13952_low_3
Description: NF13952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13952_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 8893187 - 8893650
Alignment:
| Q |
1 |
atcattggatcttgatcgaacggtttgtaaatctcttccggtctatatacacaaattagggaaagagtataaagatgaagtggggaaaaatgatgtcata |
100 |
Q |
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| T |
8893187 |
atcatcggatcttgatcgaacggtttgtaaatctcttccagtctatatacacaaattagggatagagtataaagatgaagtggggaaaaatgatgtcata |
8893286 |
T |
|
| Q |
101 |
aaaaatacaatttctgttacacaaaaagcacccatatgcaagaatacctactgattttagaatcattaaaatgtgaatnnnnnnnnnnnnnnnnnnnnnc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8893287 |
aaaaatacaatttctgttacacaaaaagcacccatatgcaagaatacctactgattttagaatcattaaaatgtgaa---gaaaaaaaaagaaaaaaaac |
8893383 |
T |
|
| Q |
201 |
taacaca--ttaatatactttattacacgcaaatgaagctataatttaaactgctttttgttctccacaagttttcttaaaaacccgattccatttggaa |
298 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8893384 |
taacacacattaatatactttattacacgcaaatgaagctataatttaaactgctttttgttccccacaagttttcttaaaaacccgattccatttggaa |
8893483 |
T |
|
| Q |
299 |
atattgttctgcatggaaaaacacggttttgtctaactcactcattcgaggtggaaagaccatgtttttccttatatatttaaaacggtacttccaaacg |
398 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8893484 |
atattgttctgcacggaaaaacacagttttgtctaactcactcattcgaggtggaaagaccatgtttttccctatatatttaaaacggtacttccaaacg |
8893583 |
T |
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| Q |
399 |
ggtcggttttttaagaaaacacgaggatgaaaatagctctcatagcttcatgtatccacatcacaaa |
465 |
Q |
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| T |
8893584 |
ggtcggttttttaagaaaacacgaggatgaaaatagctctcatagcttcatgtatccacatcacaaa |
8893650 |
T |
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